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Report for CCDS88315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88315.1 Public Mus musculus 12 Ntsr2 23 108 98 CCDS HistoryNCBI Gene:18217Re-query CCDS DB by CCDS ID:88315.1Re-query CCDS DB by GeneID:18217See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220892.1 ENSMUSP00000152290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220892.1Link to Ensembl Protein Viewer:ENSMUSP00000152290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220892Re-query CCDS DB by Protein ID:ENSMUSP00000152290
Original member NCBI NM_001361703.1 NP_001348632.1 Updated not alive Link to Nucleotide Sequence:NM_001361703.1Link to Protein Sequence:NP_001348632.1Re-query CCDS DB by Nucleotide ID:NM_001361703Re-query CCDS DB by Protein ID:NP_001348632
Current member NCBI NM_001361703.2 NP_001348632.1 Accepted alive Link to Nucleotide Sequence:NM_001361703.2Link to Protein Sequence:NP_001348632.1Re-query CCDS DB by Nucleotide ID:NM_001361703Re-query CCDS DB by Protein ID:NP_001348632Link to BLAST:NP_001348632.1

Chromosomal Locations for CCDS 88315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16653500 16654123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16656597 16656689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16658365 16658455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16659709 16659746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGAGACCAGCAGCCTGTGGCCCCCGAGGCCCAGCCCCAGTGCAGGGCTGAGCCTGGAGGCGCGGCTGG
GCGTGGACACTCGCCTCTGGGCCAAGGTGCTGTTCACCGCGCTCTATTCGCTCATCTTCGCGCTTGGCAC
AGCCGGCAATGCGCTGTCCGTGCACGTGGTGCTGAAGGCGCGGGCGGGTCGCCCCGGGCGCCTGCGCTAC
CACGTGCTCAGCCTGGCACTGTCAGCCCTGCTGCTACTGCTGATCAGCGTGCCCATGGAGCTCTACAACT
TCGTGTGGTCCCACTACCCCTGGGTCTTCGGCGATCTCGGCTGTCGTGGCTATTACTTCGTGCGTGAGCT
GTGCGCCTACGCCACGGTGCTGAGCGTGGCCAGCCTGAGCGCAGAGCGCTGCCTGGCCGTGTGCCAGCCG
CTGCGCGCCCGCCGCCTGCTCACCCCGCGCCGCACCCGCCGCCTGCTGTCACTAGTCTGGGTCGCCTCTC
TGGGCCTTGCCCTGCCCATGGCGGTTATCATGGGACAGAAGCACGAAATGGAGAGGGCCGACGGGGAGCC
TGAGCCTGCCTCGCGTGTGTGCACGGTGCTAGTAAGTCGCGCCACGCTCCAGGTCTTCATCCAGGTGAAC
GTGCTGGTCTCCTTCGTTCTCCCCTTGGCACTCACTGCTTTTCTGAATGGGATCACTGTCAACCACCTGG
TGGCCCTCTACTCCCAGGAGCCATCGTGGCTGTGTATGTCATCTGCTGGCTGCCGTACCATGCCCGCAGG
CTCATGTACTGCTACATCCCCGATGATGGATGGACTGATGAGCTCTATGACTTCTATCACTATTTCTACA
TGGTGA

Translation (281 aa):
METSSLWPPRPSPSAGLSLEARLGVDTRLWAKVLFTALYSLIFALGTAGNALSVHVVLKARAGRPGRLRY
HVLSLALSALLLLLISVPMELYNFVWSHYPWVFGDLGCRGYYFVRELCAYATVLSVASLSAERCLAVCQP
LRARRLLTPRRTRRLLSLVWVASLGLALPMAVIMGQKHEMERADGEPEPASRVCTVLVSRATLQVFIQVN
VLVSFVLPLALTAFLNGITVNHLVALYSQEPSWLCMSSAGCRTMPAGSCTATSPMMDGLMSSMTSITIST
W


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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