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Report for CCDS88237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88237.1 Public Mus musculus 11 Sp2 23 108 98 CCDS HistoryNCBI Gene:78912Re-query CCDS DB by CCDS ID:88237.1Re-query CCDS DB by GeneID:78912See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062652.6 ENSMUSP00000051403.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062652.6Link to Ensembl Protein Viewer:ENSMUSP00000051403.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062652Re-query CCDS DB by Protein ID:ENSMUSP00000051403
Original member Current member EBI ENSMUST00000107623.7 ENSMUSP00000103249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107623.7Link to Ensembl Protein Viewer:ENSMUSP00000103249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107623Re-query CCDS DB by Protein ID:ENSMUSP00000103249
Original member Current member NCBI NM_001363225.1 NP_001350154.1 Accepted alive Link to Nucleotide Sequence:NM_001363225.1Link to Protein Sequence:NP_001350154.1Re-query CCDS DB by Nucleotide ID:NM_001363225Re-query CCDS DB by Protein ID:NP_001350154Link to BLAST:NP_001350154.1
Original member Current member NCBI NM_001363226.1 NP_001350155.1 Accepted alive Link to Nucleotide Sequence:NM_001363226.1Link to Protein Sequence:NP_001350155.1Re-query CCDS DB by Nucleotide ID:NM_001363226Re-query CCDS DB by Protein ID:NP_001350155Link to BLAST:NP_001350155.1

Chromosomal Locations for CCDS 88237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96954470 96954570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96955775 96955968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96956105 96956279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96957424 96957736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96961038 96962009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96963365 96963433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGAGCATGGCCGCCACTGCTGCTGTCAGTCCCAGTGACTACCTGCAGCCTGCTGCTGCTACTACCCAGG
ACTCCCAGCCATCTCCCTTGGCCCTGCTTGCTGCGACATGTAGCAAAATTGGCCCCCCAGCTGTTGAAGC
TGCAGTGACACCTCCTGCTCCCCCCCAGCCTACCCCAAGGAAACTGGTCCCTATCAAACCCGCTCCTCTC
CCTCTCAGTCCCTGCAAGAATAGCTTTAGCATCTTATCATCTAAAGGAAATATACTTCAGATTCAGGGCT
CCCAGCTGAGTACCTCCTACCCTGGAGGGCAGTTTGTGTTTGCAATCCAGAACCCCACCCTGATCAACAA
AGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGTCCCTCAGATCCAAGGGAACAGTTCCCAGACCATC
CAGGTGCAGCCCAGTCTCACCAACCAGATCCAGGTCATCCCAGGCACCAACCAAGCCATCACCACCCCGT
CAACATCTGGTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAGAAGTCAAGTACGACTACCACCCC
TGTGCAGAGCGGGGCCAACGTGGTGAAGCTGACAGGCGGGGGTAGCAACATGACGCTCACCCTGCCGCTC
AACAACCTGGTGAACACCAGCGATATTGGGGGCCCTGCTCAGCTCCTCACTGAGAGCCCCCCCACCCCAC
TGTCTAAGACTAACAAGAAAGCTAGGAAGAAGAGCCTCCCTGTGTCACAGCCATCCGTAGCTGTGGCTGA
GCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCAGGAAACAACCTGCTGATC
GTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGGTGCCACCCAAGGCTGAGC
AGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGCCTCTGCCACCCTCCCCAC
CGTCCCCCAGAAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACACCAACCCAGGTTTATATC
CGTACACCTTCTGGTGAGGTACAGACAGTCCTTGTCCAGGACAGCCCCCCAGCAACAGCTGCAACCACAT
CAACCGTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCATCTGAGTGGCACCAGCAAAAAACATTCAGC
TGCCATTCTCCGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCTGGGAGCATCATCAGCCTGAACGCC
GCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTGTCCAAGTCCAGGGTGTGC
CTGTCACCATCACCAACACTGGCGGGCAGCAGCAGCTGACCGTGCAGAACGTTTCTGGAAACAACCTGAC
TATCAGTGGGCTGAGCCCCACCCAGATCCAGCTGCAGATGGAGCAGGCTCTAGCCGGAGAGGCCCAGCCT
GGGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGGAGAAGAGGTCTGGGGAGC
AGGGCAAGAAGAAGCACGTGTGCCACATCCCGGACTGCGGGAAGACTTTCCGGAAGACATCCTTGCTCCG
GGCCCACGTCCGCCTGCACACTGGCGAGCGGCCCTTTGTCTGCAACTGGTTCTTCTGTGGAAAGAGATTC
ACTCGGAGCGATGAACTCCAGCGACATGCTCGAACCCACACAGGGGACAAGCGCTTTGAGTGTGCCCAAT
GTCAGAAGCGCTTCATGAGGAGTGACCACCTCACCAAGCATTACAAGACCCACCTAGGCACGAAGGGCTT
GTAA

Translation (607 aa):
MSMAATAAVSPSDYLQPAAATTQDSQPSPLALLAATCSKIGPPAVEAAVTPPAPPQPTPRKLVPIKPAPL
PLSPCKNSFSILSSKGNILQIQGSQLSTSYPGGQFVFAIQNPTLINKGSRSNASIQYQVPQIQGNSSQTI
QVQPSLTNQIQVIPGTNQAITTPSTSGHKPVPIKPAPVQKSSTTTTPVQSGANVVKLTGGGSNMTLTLPL
NNLVNTSDIGGPAQLLTESPPTPLSKTNKKARKKSLPVSQPSVAVAEQVETVLIETTADNIIQAGNNLLI
VQSPGGGQPAVVQQVQVVPPKAEQQQVVQIPQQALRVVQAASATLPTVPQKPSQNFQIQTTEPTPTQVYI
RTPSGEVQTVLVQDSPPATAATTSTVTCNSPALRAPHLSGTSKKHSAAILRKERPLPKIAPAGSIISLNA
AQLAAAAQAMQTININGVQVQGVPVTITNTGGQQQLTVQNVSGNNLTISGLSPTQIQLQMEQALAGEAQP
GEKRRRMACTCPNCKDGEKRSGEQGKKKHVCHIPDCGKTFRKTSLLRAHVRLHTGERPFVCNWFFCGKRF
TRSDELQRHARTHTGDKRFECAQCQKRFMRSDHLTKHYKTHLGTKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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