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Report for CCDS88171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88171.1 Public Mus musculus 11 Elac2 23 108 98 CCDS HistoryNCBI Gene:68626Re-query CCDS DB by CCDS ID:88171.1Re-query CCDS DB by GeneID:68626See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101049.8 ENSMUSP00000098610.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101049.8Link to Ensembl Protein Viewer:ENSMUSP00000098610.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101049Re-query CCDS DB by Protein ID:ENSMUSP00000098610
Original member Current member NCBI NM_001362983.1 NP_001349912.1 Accepted alive Link to Nucleotide Sequence:NM_001362983.1Link to Protein Sequence:NP_001349912.1Re-query CCDS DB by Nucleotide ID:NM_001362983Re-query CCDS DB by Protein ID:NP_001349912Link to BLAST:NP_001349912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349912.1 824 Q80Y81-2 824 100% 0 0

Chromosomal Locations for CCDS 88171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64979111 64979331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64979718 64979768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64979907 64979977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64980608 64980672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64981617 64981674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64982756 64982824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64983594 64983725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64985563 64985621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64987271 64987329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64987408 64987480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64988032 64988144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64989353 64989448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64992221 64992359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64992439 64992524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64994236 64994354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64995306 64995402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64997868 64998006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64998341 64998379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64998508 64998617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64999137 64999236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64999318 64999438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64999686 64999764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65000296 65000440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65000995 65001228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGTGGGCGCTCCGCTCACTGTTGCGTCCCCTTGGCCTGCGCACCATGTCGCAGGGTTCGGCTCGTCGGC
CGCGGCCATCCAAAGACCCACTGCGACACCTGCGTACGCGGGAGAAGCGCGGCCCGGGTCCCGGGGGCCC
GAACACCGTGTACCTGCAGGTGGTGGCGGCGGGCGGCCGGGACGCGGGGGCTGCTCTCTATGTCTTCTCG
GAATACAACAGGTACCTTTTTAACTGCGGAGAAGGCGTCCAACGACTTATGCAGGAACACAAACTGAAAG
TCGCTCGCTTGGACAACATCTTTCTGACTCGGATGCATTGGTCAAATGTTGGGGGGTTGTGTGGAATGAT
TTTAACTTTAAAGGAAACCGGGCTTCCCAAATGTGTTCTGTCTGGACCACCACAGCTGGAGAAATATCTA
GAAGCAATCAAAATATTTTCTGGTCCATTGAAAGGAATAGAACTGGCCGTGCGGCCTCACTCTGCACCAG
AATACAAGGATGAGACCATGACTGTTTACCAGGTCCCTATCCACAGTGAACGGAGGTGTGGAAAGCAACA
GCCATCCCAGAGCCCCAGAACATCTCCCAACAGGCTCAGTCCCAAACAGTCATCGGACTCTGGATCAGCT
GAAAATGGGCAGTGCCCTCCAGAGGACAGCAGTGCAGGTGCCAACAGGAAAGCATGGGGCAGGGACCCCT
CCTTAGTGGTAGCTTTTGTCTGCAAGCTTCACTTGAGGAAAGGAAACTTCTTGGTGCTTAAAGCAAAGGA
GCTGGGCCTTCCTGTTGGGACGGCCGCCATTGCACCCATCATTGCTGCTGTCAAGGACGGGAAGAGTATC
ACTTACGAAGGAAGAGAGATTGCTGCTGAAGAGCTTTGTACACCCCCAGATCCTGGTCTTGTATTCATTG
TGGTAGAGTGTCCTGATGAAGGATTCATCCTGCCCATCTGTGAGAACGACACCTTTAAAAGGTACCAGGC
AGAGGCTGATGCACCTGTGGCGCTGGTGGTCCACATAGCCCCAGAATCTGTACTCATCGACAGCAGATAC
CAGCAGTGGATGGAGAGGTTCGGGCCTGACACACAGCACCTGATTCTGAATGAGAATTGCCCCTCGGTCC
ACAACCTGCGCAGCCACAAGATTCAGACCCAGCTCAGCCTCATCCACCCTGACATCTTCCCCCAGCTTAC
CAGCTTCTATAGTAAGGAGGAAGGGTCCACCCTCAGCGTGCCAACAGTTCGGGGTGAATGCCTCCTCAAG
TATCAGCTCCGCCCCAAGAGAGAGTGGCAGAGGGATACCACACTCGACTGCAATACTGATGAATTCATAG
CTGAGGCCTTGGAGCTCCCCAGTTTCCAGGAGAGTGTGGAGGAGTATCGGAAGAACGTGCAGGAAAACCC
AGCCCCAGCAGAGAAAAGAAGCCAGTATCCTGAAATTGTCTTCCTGGGTACGGGGTCTGCCATCCCAATG
AAGATCCGAAATGTCAGTTCCACACTCGTCAACCTAAGCCCTGACAAGTCAGTGCTCCTGGATTGTGGAG
AAGGCACTTTTGGGCAGTTGTGCCGTCATTACGGACAGCAAATAGACCGAGTCTTATGCAGCCTCACGGC
TGTGTTTGTGTCCCACCTGCACGCCGACCACCACACGGGCTTGCTGAATATCTTGCTGCAGAGAGAGCAT
GCGTTGGCATCTCTGGGGAAACCCTTCCAGCCCTTGCTTGTGGTGGCTCCTACCCAGCTCAGGGCCTGGC
TGCAGCAGTATCACAACCACTGCCAGGAGATTCTGCACCACGTCAGTATGATTCCTGCCAAATGCCTTCA
GAAAGGGGCAGAGGTCTCCAATACTACATTGGAAAGGCTGATAAGCTTGCTGTTGGAAACATGTGACTTA
GAAGAATTTCAGACCTGCCTGGTACGGCACTGCAAGCATGCTTTTGGCTGTGCACTGGTACATTCATCTG
GCTGGAAAGTCGTCTACTCGGGGGATACCATGCCCTGTGAGGCTCTGGTCCAGATGGGGAAAGATGCCAC
CCTCCTGATACATGAAGCCACTCTGGAGGATGGCTTGGAAGAGGAAGCAGTAGAGAAGACACACAGCACC
ACCTCCCAGGCTATTAATGTGGGGATGCGGATGAATGCGGAGTTCATCATGCTGAACCACTTCAGTCAGC
GGTACGCCAAGATCCCCCTTTTCAGCCCTGACTTCAACGAGAAAGTTGGCATCGCCTTTGACCACATGAA
GGTCTGCTTTGGAGACTTCCCGACAGTGCCCAAGCTGATTCCCCCACTGAAGGCCCTGTTTGCAGGTGAC
ATTGAAGAGATGGTGGAACGCAGGGAGAAGAGGGAGCTACGGCTGGTGCGAGCAGCCCTCCTGACCCAGC
AGGCAGACAGCCCAGAGGACAGAGAACCCCAACAGAAGCGGGCCCACACAGATGAACCACACAGCCCACA
GAGCAAGAAGGTCAGAGCCCAGTGA

Translation (824 aa):
MWALRSLLRPLGLRTMSQGSARRPRPSKDPLRHLRTREKRGPGPGGPNTVYLQVVAAGGRDAGAALYVFS
EYNRYLFNCGEGVQRLMQEHKLKVARLDNIFLTRMHWSNVGGLCGMILTLKETGLPKCVLSGPPQLEKYL
EAIKIFSGPLKGIELAVRPHSAPEYKDETMTVYQVPIHSERRCGKQQPSQSPRTSPNRLSPKQSSDSGSA
ENGQCPPEDSSAGANRKAWGRDPSLVVAFVCKLHLRKGNFLVLKAKELGLPVGTAAIAPIIAAVKDGKSI
TYEGREIAAEELCTPPDPGLVFIVVECPDEGFILPICENDTFKRYQAEADAPVALVVHIAPESVLIDSRY
QQWMERFGPDTQHLILNENCPSVHNLRSHKIQTQLSLIHPDIFPQLTSFYSKEEGSTLSVPTVRGECLLK
YQLRPKREWQRDTTLDCNTDEFIAEALELPSFQESVEEYRKNVQENPAPAEKRSQYPEIVFLGTGSAIPM
KIRNVSSTLVNLSPDKSVLLDCGEGTFGQLCRHYGQQIDRVLCSLTAVFVSHLHADHHTGLLNILLQREH
ALASLGKPFQPLLVVAPTQLRAWLQQYHNHCQEILHHVSMIPAKCLQKGAEVSNTTLERLISLLLETCDL
EEFQTCLVRHCKHAFGCALVHSSGWKVVYSGDTMPCEALVQMGKDATLLIHEATLEDGLEEEAVEKTHST
TSQAINVGMRMNAEFIMLNHFSQRYAKIPLFSPDFNEKVGIAFDHMKVCFGDFPTVPKLIPPLKALFAGD
IEEMVERREKRELRLVRAALLTQQADSPEDREPQQKRAHTDEPHSPQSKKVRAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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