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Report for CCDS88145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88145.1 Public Mus musculus 11 Gabra6 23 108 98 CCDS HistoryNCBI Gene:14399Re-query CCDS DB by CCDS ID:88145.1Re-query CCDS DB by GeneID:14399See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88145.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109286.3 ENSMUSP00000104909.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109286.3Link to Ensembl Protein Viewer:ENSMUSP00000104909.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109286Re-query CCDS DB by Protein ID:ENSMUSP00000104909
Original member Current member NCBI NM_001359049.1 NP_001345978.1 Accepted alive Link to Nucleotide Sequence:NM_001359049.1Link to Protein Sequence:NP_001345978.1Re-query CCDS DB by Nucleotide ID:NM_001359049Re-query CCDS DB by Protein ID:NP_001345978Link to BLAST:NP_001345978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345978.1 452 P16305-3 452 100% 0 0

Chromosomal Locations for CCDS 88145.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 42307260 42307535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42314942 42315201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42316430 42316582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42316970 42317113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42317401 42317483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42317558 42317778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42319668 42319735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42320384 42320502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 42320843 42320877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGAGGAATATGAAGGATTTGGAAGACTTCTCCAGGCTAGAAAATGCCCAAGCTCAACTTGAAGATGAAG
GCAACTTCTACTCTGAAAATGTCAGTCGGATTCTTGACAACTTGCTGGAAGGCTATGACAACCGTCTACG
GCCAGGATTTGGGGGTGCTGTAACAGAAGTCAAAACAGACATCTATGTGACCAGCTTTGGACCTGTGTCA
GATGTGGAGATGGAGTATACAATGGATGTTTTCTTCCGCCAGACTTGGACTGATGAGAGACTGAAATTTA
AAGGCCCTGCTGAGATTCTGAGCTTAAATAACTTGATGGTCAGTAAGATCTGGACTCCTGACACTTTTTT
CCGGAATGGGAAAAAGTCAATTGCTCACAACATGACCACCCCCAACAAGCTCTTCCGATTAATGCAGAAT
GGAACAATCCTCTATACCATGAGGCTCACCATCAACGCTGATTGCCCCATGAGATTGGTTAACTTCCCTA
TGGATGGACACGCTTGTCCACTCAAGTTTGGGAGCTATGCTTATCCTAAAACTGAAATCATATATACATG
GAAAAAAGGACCACTTTACTCAGTAGAAGTCCCAGAAGAATCTTCTAGCCTCCTCCAGTATGATTTGATT
GGGCAAACAGTTTCTAGTGAGACAATTAAATCTAACACTGGTGAATATGTAATCATGACAGTCTATTTCC
ACTTACAAAGGAAGATGGGCTATTTCATGATCCAGATATACACTCCGTGCATCATGACAGTCATTCTTTC
TCAAGTGTCTTTCTGGATTAATAAGGAGTCAGTCCCAGCAAGAACTGTCTTTGGAATCACCACTGTTTTA
ACCATGACCACCTTAAGCATCAGTGCTCGGCACTCTCTACCCAAAGTGTCCTATGCAACCGCCATGGATT
GGTTCATAGCTGTATGCTTTGCTTTTGTCTTTTCTGCTCTCATTGAATTCGCAGCTGTCAACTACTTCAC
CAATCTCCAGTCACAGAAGGCTGAAAGGCAGGCACAAACTGCAGCCACGCCCCCTGTGGCAAAGTCAAAA
GCGTCTGAATCCCTGCAAGCAGAGATTGTTGTGCATTCTGACTCCAAGTACCATCTGAAGAAGAGAATCA
GCTCTCTGACTTTGCCCATCGTTCCATCTTCTGAGGCCAGCAAAGCCCTCAGTAGAACGCCCATCTTAAA
ATCGACGCCTGTCTCTCCCCCATTGCTCTTACCAGCCACTGGGGGCACCAGCAAAATAGATCAGTATTCT
CGAATTCTCTTCCCAGTAGCTTTTGCAGGATTCAACCTTGTGTACTGGATAGTTTACCTTTCCAAAGATA
CAATGGAAGTGAGCAGTACTGTTGAGTAG

Translation (452 aa):
MRNMKDLEDFSRLENAQAQLEDEGNFYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDIYVTSFGPVS
DVEMEYTMDVFFRQTWTDERLKFKGPAEILSLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRLMQN
GTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKTEIIYTWKKGPLYSVEVPEESSSLLQYDLI
GQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVL
TMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQSQKAERQAQTAATPPVAKSK
ASESLQAEIVVHSDSKYHLKKRISSLTLPIVPSSEASKALSRTPILKSTPVSPPLLLPATGGTSKIDQYS
RILFPVAFAGFNLVYWIVYLSKDTMEVSSTVE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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