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Report for CCDS87948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87948.1 Public Mus musculus 1 Cr1l 23 108 98 CCDS HistoryNCBI Gene:12946Re-query CCDS DB by CCDS ID:87948.1Re-query CCDS DB by GeneID:12946See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193094.5 ENSMUSP00000142309.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193094.5Link to Ensembl Protein Viewer:ENSMUSP00000142309.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193094Re-query CCDS DB by Protein ID:ENSMUSP00000142309
Original member Current member NCBI NM_001355060.1 NP_001341989.1 Accepted alive Link to Nucleotide Sequence:NM_001355060.1Link to Protein Sequence:NP_001341989.1Re-query CCDS DB by Nucleotide ID:NM_001355060Re-query CCDS DB by Protein ID:NP_001341989Link to BLAST:NP_001341989.1

Chromosomal Locations for CCDS 87948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 195098829 195098841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195106818 195106922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195111080 195111155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195112374 195112397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195114656 195114841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195117479 195117880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195123690 195123775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195129147 195129246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195129830 195130009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195131188 195131305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGAGGTCTCTTCTCGGAGTTCAGAGCCTCTGGATCCGGTGTGGCTCCTTGTAGCCTTCGGCCGGGGAG
GAGTCAAGCTAGAAGTTTTGCTGCTGTTCTTGCTGCCATTTACTTTGGGTCACTGCCCAGCCCCATCACA
GCTTCCTTCTGCCAAACCTATAAATCTAACTGATGAATCCATGTTTCCCATTGGAACATATTTGTTGTAT
GAATGTCTCCCAGGATATATCAAGAGGCAGTTCTCTATCACCTGCAAACAAGACTCAACCTGGACGAGTG
CTGAAGATAAGTGTATACGAAAACAATGTAAAACTCCTTCAGATCCTGAGAATGGCTTGGTACATGTACA
CACAGGCATTCAGTTTGGATCCCGTATTAATTATACTTGTAATCAAGGATACCGCCTCATTGGTTCCTCC
TCTGCTGTATGTGTCATCACTGATCAAAGTGTTGATTGGGATACTGAGGCACCTATTTGTGAGTGGATTC
CTTGTGAGATACCCCCAGGCATTCCCAATGGAGATTTCTTCAGTTCAACCAGAGAAGACTTTCATTATGG
AATGGTGGTTACCTACCGCTGCAACACTGATGCGAGAGGGAAGGCGCTCTTTAACCTGGTGGGTGAGCCC
TCCTTATACTGTACCAGCAACGATGGTGAAATTGGAGTCTGGAGCGGCCCTCCTCCTCAGTGCATTGAAC
TCAACAAATGTACTCCTCCTCCCTATGTTGAAAATGCAGTCATGCTGTCTGAGAACAGAAGCTTGTTTTC
CTTAAGGGATATTGTGGAGTTTAGATGTCACCCTGGCTTTATCATGAAAGGAGCCAGCAGTGTGCATTGT
CAGTCCCTAAACAAATGGGAGCCAGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTCGTCTCCCTCAGG
AGATGAGTGGATTCCAGAAGGGGTTGGGAATGAAAAAAGAATATTATTATGGAGAGAATGTAACCTTGGA
ATGTGAGGATGGGTATACTCTAGAAGGCAGTTCTCAAAGCCAGTGCCAGTCTGATGGCAGCTGGAATCCT
CTTCTGGCCAAATGTGTATCTCGCTCAATCAGTGGTCTAATTGTTGGAATTTTCATTGGGATAATCGTCT
TTATTTTAGTCATCATTGTTTTCATTTGGATGATTCTGAAGTATAAAAAACGCAATACCACAGATGAAAA
GTATAAAGAAGTGGGTATTCATTTAAATTATAAAGAAGACAGCTGTGTCCGCCTTCAGTCTCTGCTCACA
AGTCAGGAGAACAGCAGAACAAGATTTTAA

Translation (429 aa):
MEVSSRSSEPLDPVWLLVAFGRGGVKLEVLLLFLLPFTLGHCPAPSQLPSAKPINLTDESMFPIGTYLLY
ECLPGYIKRQFSITCKQDSTWTSAEDKCIRKQCKTPSDPENGLVHVHTGIQFGSRINYTCNQGYRLIGSS
SAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEP
SLYCTSNDGEIGVWSGPPPQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHC
QSLNKWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSWNP
LLAKCVSRSISGLIVGIFIGIIVFILVIIVFIWMILKYKKRNTTDEKYKEVGIHLNYKEDSCVRLQSLLT
SQENSRTRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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