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Report for CCDS87920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87920.1 Public Mus musculus 1 Mpz 23 108 98 CCDS HistoryNCBI Gene:17528Re-query CCDS DB by CCDS ID:87920.1Re-query CCDS DB by GeneID:17528See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238908.1 ENSMUSP00000159037.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238908.1Link to Ensembl Protein Viewer:ENSMUSP00000159037.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238908Re-query CCDS DB by Protein ID:ENSMUSP00000159037
Original member Current member NCBI NM_001315500.1 NP_001302429.1 Accepted alive Link to Nucleotide Sequence:NM_001315500.1Link to Protein Sequence:NP_001302429.1Re-query CCDS DB by Nucleotide ID:NM_001315500Re-query CCDS DB by Protein ID:NP_001302429Link to BLAST:NP_001302429.1

Chromosomal Locations for CCDS 87920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171155582 171155648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171158361 171158527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171158753 171158966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171159498 171159633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171159774 171159834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171159942 171160235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TAG) with X at amino acid position 249

Nucleotide Sequence (939 nt):
ATGGCTCCCGGGGCTCCCTCCTCCAGCCCCAGCCCTATCCTGGCTGCCCTGCTCTTCTCTTCTTTGGTGC
TCTCTCCAGCCCTGGCCATTGTGGTTTACACGGACAGGGAAATCTATGGTGCCGTGGGCTCCCAGGTGAC
CCTGCACTGCTCCTTCTGGTCCAGTGAATGGGTCTCAGATGACATCTCTTTTACCTGGCGCTACCAGCCT
GAAGGGGGCCGAGATGCCATTTCGATCTTCCACTATGCCAAGGGACAACCTTACATCGATGAGGTGGGGA
CCTTCAAAGAGCGCATCCAGTGGGTAGGGGACCCTCGCTGGAAGGATGGCTCCATTGTCATACACAACCT
AGACTACAGTGACAACGGCACTTTCACATGTGATGTCAAAAACCCACCGGACATAGTGGGCAAGACCTCT
CAGGTCACGCTCTATGTCTTTGAAAAAGTGCCCACTAGGTATGGGGTGGTGTTGGGAGCAGTGATCGGGG
GCATCCTCGGGGTGGTGCTGTTGCTGCTGTTGCTCTTCTACCTGATTCGGTACTGCTGGCTGCGCAGGCA
GGCTGCCCTGCAGAGAAGGCTCAGTGCCATGGAGAAGGGGAGATTTCACAAATCTTCGAAGGACTCCTCG
AAGCGAGGGCGGCAGACGCCAGTGCTGTATGCCATGCTGGACCACAGCCGAAGCACCAAAGCTGCCAGTG
AGAAGAAATCAAAAGGGCTGGGGGAGTCTCGCAAGGATAAGAAATAGCGGTTAGCGGGCCGGGCGGGGGG
TCGGGGGTCTGCGACGGAGTCCTCCAAAGGCTCTCAGGTGGTGGTCATCGAGATGGAGCTTCGCAAAGAT
GAGCAGAGCTCGGAGCTCCGGCCTGCAGTCAAGTCCCCCAGTAGAACCAGCCTCAAGAACGCCCTCAAGA
ACATGATGGGCCTGGACTCGGACAAGTGA

Translation (312 aa):
MAPGAPSSSPSPILAALLFSSLVLSPALAIVVYTDREIYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQP
EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTS
QVTLYVFEKVPTRYGVVLGAVIGGILGVVLLLLLLFYLIRYCWLRRQAALQRRLSAMEKGRFHKSSKDSS
KRGRQTPVLYAMLDHSRSTKAASEKKSKGLGESRKDKKXRLAGRAGGRGSATESSKGSQVVVIEMELRKD
EQSSELRPAVKSPSRTSLKNALKNMMGLDSDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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