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Report for CCDS87420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87420.1 Public Homo sapiens 6 CCNC 24 110 108 CCDS HistoryNCBI Gene:892Re-query CCDS DB by CCDS ID:87420.1Re-query CCDS DB by GeneID:892See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518714.5 ENSP00000430294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518714.5Link to Ensembl Protein Viewer:ENSP00000430294.1Re-query CCDS DB by Nucleotide ID:ENST00000518714Re-query CCDS DB by Protein ID:ENSP00000430294
Original member Current member EBI ENST00000520371.5 ENSP00000430381.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520371.5Link to Ensembl Protein Viewer:ENSP00000430381.1Re-query CCDS DB by Nucleotide ID:ENST00000520371Re-query CCDS DB by Protein ID:ENSP00000430381
Original member Current member NCBI NM_001363537.2 NP_001350466.1 Accepted alive Link to Nucleotide Sequence:NM_001363537.2Link to Protein Sequence:NP_001350466.1Re-query CCDS DB by Nucleotide ID:NM_001363537Re-query CCDS DB by Protein ID:NP_001350466Link to BLAST:NP_001350466.1

Chromosomal Locations for CCDS 87420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99544222 99544273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99545112 99545230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99546395 99546474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99549508 99549575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99550218 99550309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99550993 99551028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99551840 99551895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99558497 99558548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99561367 99561436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99561597 99561681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99562842 99562948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99568496 99568527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGCAGGGAACTTTTGGCAGAGCTCCCACTATTTGCAATGGATTTTGGATAAACAAGATCTGTTGAAGG
AGCGCCAAAAGGATTTAAAGTTTCTCTCAGAGGAAGAATATTGGAAGTTACAAATATTTTTTACAAATGT
TATCCAAGCATTAGGTGAACATCTTAAATTAAGACAACAAGTTATTGCCACTGCTACGGTATATTTCAAG
AGATTCTATGCCAGGTATTCTCTGAAAAGTATAGATCCTGTATTAATGGCTCCTACATGTGTGTTTTTGG
CATCCAAAGTAGAGGAATTTGGAGTAGTTTCAAATACAAGATTGATTGCTGCTGCTACTTCTGTATTAAA
AACTAGATTTTCATATGCCTTTCCAAAGGAATTTCCTTATAGGATGAATCATATATTAGAATGTGAATTC
TATCTGTTAGAACTAATGGATTGTTGCTTGATAGTGTATCATCCTTATAGACCTTTGCTCCAGTATGTGC
AGGACATGGGCCAAGAAGACATGTTGCTTCCCCTTGCATGGAGGATAGTGAATGATACCTACAGAACGGA
TCTTTGCCTACTGTATCCTCCTTTCATGATAGCTTTAGCTTGCCTACATGTAGCCTGTGTTGTACAGCAG
AAAGATGCCAGGCAATGGTTTGCTGAGCTTTCTGTGGATATGGAAAAGATTTTGGAAATAATCAGGGTTA
TTTTAAAACTATATGAGCAGTGGAAGAATTTCGATGAGAGAAAAGAGATGGCAACCATTCTTAGTAAGAT
GCCAAAACCAAAACCACCTCCAAACAGAAATTCCCTGAGTGATTCTCCACTAGTGGCAGGGCCTGAAGCT
GCAAGATGA

Translation (282 aa):
MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFK
RFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEF
YLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQ
KDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNRNSLSDSPLVAGPEA
AR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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