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Report for CCDS87323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87323.1 Public Homo sapiens 5 SLC25A48 24 110 108 CCDS HistoryNCBI Gene:153328Re-query CCDS DB by CCDS ID:87323.1Re-query CCDS DB by GeneID:153328See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646290.1 ENSP00000493514.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646290.1Link to Ensembl Protein Viewer:ENSP00000493514.1Re-query CCDS DB by Nucleotide ID:ENST00000646290Re-query CCDS DB by Protein ID:ENSP00000493514
Original member Current member NCBI NM_001349335.2 NP_001336264.1 Accepted alive Link to Nucleotide Sequence:NM_001349335.2Link to Protein Sequence:NP_001336264.1Re-query CCDS DB by Nucleotide ID:NM_001349335Re-query CCDS DB by Protein ID:NP_001336264Link to BLAST:NP_001336264.1

Chromosomal Locations for CCDS 87323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135852563 135852821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135871461 135871718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135874021 135874154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135879968 135880090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGTTCGGCTTCTTCAAGGGCATGTCCTTCCCCCTCGCCAGCATTGCCGTCTACAACTCCGTGGTGTTTG
GGGTCTTCAGTAACACGCAGCGGTTCCTCAGCCAGCACCGCTGCGGGGAGCCAGAGGCCAGTCCTCCCCG
CACGCTGTCAGACCTGCTCCTGGCCAGCATGGTGGCCGGCGTGGTCTCTGTCGGGCTGGGAGGGCCCGTG
GACCTCATCAAGATCCGGTTGCAGATGCAGACACAACCGTTTCGGGACGCCAACCTCGGTTTGAAGTCCA
GGGCAGTGGCTCCTGCGGAGCAGCCAGCATACCAGGGGCCAGTGCACTGCATTACAACCATTGTGAGGAA
TGAGGGCCTGGCGGGGCTATACCGGGGGGCCAGTGCCATGCTGCTGAGGGATGTCCCAGGCTATTGCCTC
TACTTCATCCCCTACGTGTTCCTGAGTGAGTGGATCACACCTGAGGCCTGCACAGGCCCCAGCCCCTGTG
CCGTGTGGCTGGCGGGCGGCATGGCAGGAGCAATTTCTTGGGGGACAGCGACTCCTATGGATGTCGTGAA
AAGTCGACTCCAAGCTGATGGGGTTTATTTAAACAAATATAAAGGTGTCCTGGACTGTATCTCCCAGAGT
TACCAGAAGGAAGGTCTTAAAGTGTTTTTCAGAGGCATCACTGTGAACGCGGTGCGGGGCTTCCCCATGA
GTGCGGCCATGTTCCTTGGGTACGAGCTGTCGCTGCAGGCTATCCGCGGGGACCACGCAGTGACGAGCCC
ATAA

Translation (257 aa):
MFGFFKGMSFPLASIAVYNSVVFGVFSNTQRFLSQHRCGEPEASPPRTLSDLLLASMVAGVVSVGLGGPV
DLIKIRLQMQTQPFRDANLGLKSRAVAPAEQPAYQGPVHCITTIVRNEGLAGLYRGASAMLLRDVPGYCL
YFIPYVFLSEWITPEACTGPSPCAVWLAGGMAGAISWGTATPMDVVKSRLQADGVYLNKYKGVLDCISQS
YQKEGLKVFFRGITVNAVRGFPMSAAMFLGYELSLQAIRGDHAVTSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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