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Report for CCDS87211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87211.1 Public Homo sapiens 4 PPARGC1A 24 110 108 CCDS HistoryNCBI Gene:10891Re-query CCDS DB by CCDS ID:87211.1Re-query CCDS DB by GeneID:10891See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 87211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000613098.4 ENSP00000481498.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613098.4Link to Ensembl Protein Viewer:ENSP00000481498.1Re-query CCDS DB by Nucleotide ID:ENST00000613098Re-query CCDS DB by Protein ID:ENSP00000481498
Original member Current member NCBI NM_001330753.2 NP_001317682.1 Accepted alive Link to Nucleotide Sequence:NM_001330753.2Link to Protein Sequence:NP_001317682.1Re-query CCDS DB by Nucleotide ID:NM_001330753Re-query CCDS DB by Protein ID:NP_001317682Link to BLAST:NP_001317682.1
Original member Current member NCBI NM_001354826.2 NP_001341755.1 Accepted alive Link to Nucleotide Sequence:NM_001354826.2Link to Protein Sequence:NP_001341755.1Re-query CCDS DB by Nucleotide ID:NM_001354826Re-query CCDS DB by Protein ID:NP_001341755Link to BLAST:NP_001341755.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317682.1 671 Q9UBK2-9 671 100% 0 0
NP_001341755.1 671 Q9UBK2-9 671 100% 0 0

Chromosomal Locations for CCDS 87211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 23795822 23795925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23801730 23801881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23802224 23802345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23812747 23812867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23813021 23813125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23813690 23814605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23824280 23824353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23824463 23824508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23828400 23828604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23829463 23829585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 23831557 23831604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGCCTGACGGCACCCCTCCACCCCAGGAGGCAGAAGAGCCGTCTCTACTTAAGAAGCTCTTACTGGCAC
CAGCCAACACTCAGCTAAGTTATAATGAATGCAGTGGTCTCAGTACCCAGAACCATGCAAATCACAATCA
CAGGATCAGAACAAACCCTGCAATTGTTAAGACTGAGAATTCATGGAGCAATAAAGCGAAGAGTATTTGT
CAACAGCAAAAGCCACAAAGACGTCCCTGCTCGGAGCTTCTCAAATATCTGACCACAAACGATGACCCTC
CTCACACCAAACCCACAGAGAACAGAAACAGCAGCAGAGACAAATGCACCTCCAAAAAGAAGTCCCACAC
ACAGTCGCAGTCACAACACTTACAAGCCAAACCAACAACTTTATCTCTTCCTCTGACCCCAGAGTCACCA
AATGACCCCAAGGGTTCCCCATTTGAGAACAAGACTATTGAACGCACCTTAAGTGTGGAACTCTCTGGAA
CTGCAGGCCTAACTCCACCCACCACTCCTCCTCATAAAGCCAACCAAGATAACCCTTTTAGGGCTTCTCC
AAAGCTGAAGTCCTCTTGCAAGACTGTGGTGCCACCACCATCAAAGAAGCCCAGGTACAGTGAGTCTTCT
GGTACACAAGGCAATAACTCCACCAAGAAAGGGCCGGAGCAATCCGAGTTGTATGCACAACTCAGCAAGT
CCTCAGTCCTCACTGGTGGACACGAGGAAAGGAAGACCAAGCGGCCCAGTCTGCGGCTGTTTGGTGACCA
TGACTATTGCCAGTCAATTAATTCCAAAACAGAAATACTCATTAATATATCACAGGAGCTCCAAGACTCT
AGACAACTAGAAAATAAAGATGTCTCCTCTGATTGGCAGGGGCAGATTTGTTCTTCCACAGATTCAGACC
AGTGCTACCTGAGAGAGACTTTGGAGGCAAGCAAGCAGGTCTCTCCTTGCAGCACAAGAAAACAGCTCCA
AGACCAGGAAATCCGAGCCGAGCTGAACAAGCACTTCGGTCATCCCAGTCAAGCTGTTTTTGACGACGAA
GCAGACAAGACCGGTGAACTGAGGGACAGTGATTTCAGTAATGAACAATTCTCCAAACTACCTATGTTTA
TAAATTCAGGACTAGCCATGGATGGCCTGTTTGATGACAGCGAAGATGAAAGTGATAAACTGAGCTACCC
TTGGGATGGCACGCAATCCTATTCATTGTTCAATGTGTCTCCTTCTTGTTCTTCTTTTAACTCTCCATGT
AGAGATTCTGTGTCACCACCCAAATCCTTATTTTCTCAAAGACCCCAAAGGATGCGCTCTCGTTCAAGGT
CCTTTTCTCGACACAGGTCGTGTTCCCGATCACCATATTCCAGGTCAAGATCAAGGTCTCCAGGCAGTAG
ATCCTCTTCAAGATCCTGCTATTACTATGAGTCAAGCCACTACAGACACCGCACGCACCGAAATTCTCCC
TTGTATGTGAGATCACGTTCAAGATCGCCCTACAGCCGTCGGCCCAGGTATGACAGCTACGAGGAATATC
AGCACGAGAGGCTGAAGAGGGAAGAATATCGCAGAGAGTATGAGAAGCGAGAGTCTGAGAGGGCCAAGCA
AAGGGAGAGGCAGAGGCAGAAGGCAATTGAAGAGCGCCGTGTGATTTATGTCGGTAAAATCAGACCTGAC
ACAACACGGACAGAACTGAGGGACCGTTTTGAAGTTTTTGGTGAAATTGAGGAGTGCACAGTAAATCTGC
GGGATGATGGAGACAGCTATGGTTTCATTACCTACCGTTATACCTGTGATGCTTTTGCTGCTCTTGAAAA
TGGATACACTTTGCGCAGGTCAAACGAAACTGACTTTGAGCTGTACTTTTGTGGACGCAAGCAATTTTTC
AAGTCTAACTATGCAGACCTAGATTCAAACTCAGATGACTTTGACCCTGCTTCCACCAAGAGCAAGTATG
ACTCTCTGGATTTTGATAGTTTACTGAAAGAAGCTCAGAGAAGCTTGCGCAGGTAA

Translation (671 aa):
MPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNPAIVKTENSWSNKAKSIC
QQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKSHTQSQSQHLQAKPTTLSLPLTPESP
NDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESS
GTQGNNSTKKGPEQSELYAQLSKSSVLTGGHEERKTKRPSLRLFGDHDYCQSINSKTEILINISQELQDS
RQLENKDVSSDWQGQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDE
ADKTGELRDSDFSNEQFSKLPMFINSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPC
RDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSP
LYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEERRVIYVGKIRPD
TTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITYRYTCDAFAALENGYTLRRSNETDFELYFCGRKQFF
KSNYADLDSNSDDFDPASTKSKYDSLDFDSLLKEAQRSLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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