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Report for CCDS86324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86324.1 Public Homo sapiens 12 NTN4 24 110 108 CCDS HistoryNCBI Gene:59277Re-query CCDS DB by CCDS ID:86324.1Re-query CCDS DB by GeneID:59277See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344911.8 ENSP00000339436.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344911.8Link to Ensembl Protein Viewer:ENSP00000339436.4Re-query CCDS DB by Nucleotide ID:ENST00000344911Re-query CCDS DB by Protein ID:ENSP00000339436
Original member Current member EBI ENST00000538383.5 ENSP00000444432.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538383.5Link to Ensembl Protein Viewer:ENSP00000444432.1Re-query CCDS DB by Nucleotide ID:ENST00000538383Re-query CCDS DB by Protein ID:ENSP00000444432
Original member Current member NCBI NM_001329701.2 NP_001316630.1 Accepted alive Link to Nucleotide Sequence:NM_001329701.2Link to Protein Sequence:NP_001316630.1Re-query CCDS DB by Nucleotide ID:NM_001329701Re-query CCDS DB by Protein ID:NP_001316630Link to BLAST:NP_001316630.1
Original member Current member NCBI NM_001329702.2 NP_001316631.1 Accepted alive Link to Nucleotide Sequence:NM_001329702.2Link to Protein Sequence:NP_001316631.1Re-query CCDS DB by Nucleotide ID:NM_001329702Re-query CCDS DB by Protein ID:NP_001316631Link to BLAST:NP_001316631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316630.1 591 Q9HB63-3 591 100% 0 0
NP_001316631.1 591 Q9HB63-3 591 100% 0 0

Chromosomal Locations for CCDS 86324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 95659086 95659222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95665810 95665980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95670078 95670146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95682707 95682822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95683498 95683711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95710441 95710629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95713212 95713338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95737866 95738144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95786939 95787412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGGAAATTTGGCTTTGGGGCGAAAACTCTGGGCAGACACCACCTGCGGTCAGAATGCTACCGAACTGT
ACTGCTTCTACAGTGAGAACACGGATCTGACTTGTCGGCAGCCCAAATGTGACAAGTGCAATGCTGCCTA
TCCTCACCTGGCTCACCTGCCATCTGCCATGGCAGACTCATCCTTCCGGTTTCCTCGCACATGGTGGCAG
TCTGCGGAGGATGTGCACAGAGAAAAGATCCAGTTAGACCTGGAAGCTGAATTCTACTTCACTCACCTAA
TTGTGATGTTCAAGTCCCCCAGGCCGGCTGCCATGGTGCTGGACCGCTCCCAGGACTTTGGGAAAACATG
GAAGCCTTATAAGTACTTTGCGACTAACTGCTCCGCTACATTTGGCCTGGAAGATGATGTTGTCAAGAAG
GGCGCTATTTGTACTTCTAAATACTCCAGTCCTTTTCCATGCACTGGAGGAGAGGTTATTTTCAAAGCTT
TGTCACCACCATACGATACAGAGAACCCTTACAGTGCCAAAGTTCAGGAGCAGCTGAAGATCACCAACCT
TCGCGTGCAGCTGCTGAAACGACAGTCTTGTCCCTGTCAGAGAAATGACCTGAACGAAGAGCCTCAACAT
TTTACACACTATGCAATCTATGATTTCATTGTCAAGGGCAGCTGCTTCTGCAATGGCCACGCTGATCAAT
GCATACCTGTTCATGGCTTCAGACCTGTCAAGGCCCCAGGAACATTCCACATGGTCCATGGGAAGTGTAT
GTGTAAGCACAACACAGCAGGCAGCCACTGCCAGCACTGTGCCCCGTTATACAATGACCGGCCATGGGAG
GCAGCTGATGGCAAAACGGGGGCTCCCAACGAGTGCAGAACCTGCAAGTGTAATGGGCATGCTGATACCT
GTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGTGGTGTCTGTGATGACTGTCAGCA
CAACACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGACCTGCGGAGACCCTTCTCA
GCTCCAGATGCTTGCAAACCGTGTTCCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCCAACTCAGTGA
CCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTG
CATGGTGGGATACTGGGGCTTCGGAGACTATGGCTGTCGACCATGTGACTGTGCGGGGAGCTGTGACCCT
ATCACCGGAGACTGCATCAGCAGCCACACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCGTCCCG
TGCACAATAAGAGCGAACCAGCCTGGGAGTGGGAGGATGCGCAGGGGTTTTCTGCACTTCTACACTCAGG
TAAATGCGAATGTAAGGAACAGACATTAGGAAATGCCAAGGCATTCTGTGGAATGAAATATTCATATGTG
CTAAAAATAAAGATTTTATCAGCTCATGATAAAGGTACTCATGTTGAGGTCAATGTGAAGATTAAAAAGG
TCTTAAAATCTACCAAACTGAAGATTTTCCGAGGAAAGCGAACATTATATCCAGAATCATGGACGGACAG
AGGATGCACTTGTCCAATCCTCAATCCTGGTTTGGAATACCTTGTAGCAGGACATGAGGATATAAGAACA
GGCAAACTAATTGTGAATATGAAAAGCTTTGTCCAGCACTGGAAACCTTCTCTTGGAAGAAAAGTCATGG
ATATTTTAAAAAGAGAGTGCAAGTAG

Translation (591 aa):
MGNLALGRKLWADTTCGQNATELYCFYSENTDLTCRQPKCDKCNAAYPHLAHLPSAMADSSFRFPRTWWQ
SAEDVHREKIQLDLEAEFYFTHLIVMFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKK
GAICTSKYSSPFPCTGGEVIFKALSPPYDTENPYSAKVQEQLKITNLRVQLLKRQSCPCQRNDLNEEPQH
FTHYAIYDFIVKGSCFCNGHADQCIPVHGFRPVKAPGTFHMVHGKCMCKHNTAGSHCQHCAPLYNDRPWE
AADGKTGAPNECRTCKCNGHADTCHFDVNVWEASGNRSGGVCDDCQHNTEGQYCQRCKPGFYRDLRRPFS
APDACKPCSCHPVGSAVLPANSVTFCDPSNGDCPCKPGVAGRRCDRCMVGYWGFGDYGCRPCDCAGSCDP
ITGDCISSHTDIDWYHEVPDFRPVHNKSEPAWEWEDAQGFSALLHSGKCECKEQTLGNAKAFCGMKYSYV
LKIKILSAHDKGTHVEVNVKIKKVLKSTKLKIFRGKRTLYPESWTDRGCTCPILNPGLEYLVAGHEDIRT
GKLIVNMKSFVQHWKPSLGRKVMDILKRECK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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