CCDS Report for Consensus CDS

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Report for CCDS85156.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
85156.1	Public	Mus musculus	6	Clstn3	23	108	98

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85156.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000112523.7	ENSMUSP00000108142.1	Accepted	alive
		NCBI	NM_001346656.1	NP_001333585.1	Accepted	alive

Chromosomal Locations for CCDS 85156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)

Genome Browser links:

Chromosome	Start	Stop
6	124431592	124431732
6	124431958	124432160
6	124436818	124436953
6	124437375	124437520
6	124438270	124438440
6	124438759	124438985
6	124449490	124449638
6	124449774	124449931
6	124450706	124450759
6	124451306	124451468
6	124456877	124456989
6	124457856	124458137
6	124458544	124458729
6	124459158	124459307
6	124459766	124459974
6	124461532	124461727
6	124462110	124462185

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGGAGAATGACAACACGGTCCTGTTGAACCCACCACTCTTTGCCTTGGATAAAGATGCTCCACTGCGCT ATGCAGGTGAGATCTGCGGCTTCCGGCTCCATGGATCTGGGGTACCCTTCGAGGCTGTGATCCTGGACAA GGCAACGGGTGAAGGGCTGATCCGGGCTAAGGAGCCCGTGGACTGTGAGGCCCAGAAGGAACACACTTTT ACCATTCAGGCTTATGACTGTGGCGAGGGACCCGATGGCACCAATACCAAGAAGTCTCACAAGGCAACCG TGCATGTTCGGGTCAATGATGTGAATGAGTTTGCCCCGGTCTTTGTGGAGCGTCTGTACCGTGCTGCAGT GACGGAGGGGAAGCTGTATGATCGGATCTTACGTGTGGAAGCCATTGATGGCGACTGCTCCCCGCAGTAC AGCCAGATCTGCTACTATGAGATCCTTACGCCCAACACCCCTTTCCTCATTGACAATGATGGCAACATTG AGAACACAGAGAAGCTACAGTACAGTGGCGAGAAACTCTACAAGTTCACAGTGACAGCGTATGACTGTGG GAAGAAGCGAGCGGCAGATGATGCTGAGGTGGAGATTCAGGTGAAGCCCACCTGCAAACCCAGCTGGCAA GGCTGGAACAAAAGGATTGAATATGCCCCAGGAGCCGGGAGCTTGGCTTTGTTCCCTGGCATCCGTCTGG AGACCTGTGATGAGCCACTGTGGAACATTCAGGCCACCATAGAGCTGCAGACCAGCCATGTGGCCAAGGG CTGCGACCGAGACAACTATTCAGAGAGGGCTCTGCGGAAGCTCTGTGGTGCTGCTACTGGGGAGGTGGAC CTGTTGCCCATGCCCGGCCCCAATGCCAACTGGACAGCGGGGCTGTCGGTGCACTACAGCCAGGACAGCA GCCTCATCTACTGGTTCAATGGCACACAAGCTGTGCAAGTTCCCCTGGGTGGTCCAGCAGGGCTGGGCTC TGGGCCGCAGGATGGCTTCAGCGACCACTTTACCCTGTCCTTCTGGATGAAGCATAGTGTGACTCCCAGC AAGGGGAAGAAGGAGGAGGAGACCATTGTGTGTAACACAGTCCAGAATGAGGACGGCTACTCTCACTACT CACTGACTGTCCATGGCTGCAGAATTGCCTTTCTCTACTGGCCGTTGCTTGAGAGTGCTCGTCCTGTCAA GTTCCTCTGGAAGCTGGAGCAGGTGTGTGATGATGAATGGCATCACTACGCCCTGAACCTGGAGTTCCCC ACGGTCACACTGTATACTGACGGTATCTCCTTCGACCCGGCTCTCATCCACGACAATGGTCTCATCCACC CACCCAGGAGGGAACCTGCACTCATGATTGGGGCCTGCTGGACTGAAGAGAAGAACAAAGAGAAGAAGGG GGGAGAGAACAGTACAGACACAGCCTCAGGAGACCCCTTGCTGATCCACCACTACTTTCATGGCTACCTA GCTGGTTTCAGCGTGCGCTCAGGTCGCCTGGAGAGCCGTGAGGTCATCGAGTGCCTCTATGCATGTCGGG AGGGGCTGGACTATAGGGATTTCGAGAGCCTGGGCAAAGGCATGAAGGTCCACGTGAACCCCTCGCAGTC CCTGCTCACCCTGGAGGGGGATGATGTGGAGACCTTCAACCATGCCCTGCAGCATGTGGCTTACATGAAC ACTCTGCGCTTTGCCACACCCGGCGTCAGGCCCCTGCGCCTCACCACCGCTGTCAAGTGCTTTAGTGAAG AGTCCTGTGTCTCCATCCCTGAAGTGGAGGGCTATGTGGTGGTTCTTCAGCCCGACGCCCCCCAGATCCT TCTGAGTGGCACAGCTCATTTTGCCCGCCCAGCTGTGGACTTTGAGGGACCCGAGGGAGTCCCCTTGTTC CCCGATCTTCAGATCACCTGCTCCATTTCTCACCAGGTGGAGGCCAAAGCAGATGAGAGTTGGCAGGGCA CAGTGACAGACACACGCATGTCAGATGAGATTGTACACAACTTGGACGGCTGTGAGATTTCTCTGGTGGG GGATGACCTAGACCCTGAACGAGAGAGCCTGCTCTTGGACATGGCTTCCCTGCAGCAGCGAGGCCTGGAA CTCACCAACACATCTGCCTACCTCACCATTGCTGGGGTGGAGACCATCACTGTGTATGAAGAGATCCTGA GGCAGGCTCGTTATCAGCTTCGGCATGGAGCTGCCCTTTATGCCAGGAAATTCCGGCTTTCTTGCTCGGA GATGAACGGCCGATACTCCAGCAACGAATTCATTGTGGAGGTCAACGTCCTGCATAGCATGAACCGGGTG GCCCATCCCAGTCATGTGCTCAGTTCACAGCAGTTCCTGCACCGGGGTCACCAGCCTCCTCCTGAGATGG CTGGACACAGCCTGGCCAGCTCCCACCGGAACTCCATGGTCCCCAGTGCTGCGACTCTCATCATTGTGGT ATGCGTGGGCTTTCTGGTGCTTATGGTTATCCTCGGCCTCGTTCGGATCCACTCCCTTCATCGCCGCGTC TCAGGAACTGGCGGACCTTCAGGGGCTTCCACTGACCCGAAGGACCCTGACCTCTTCTGGGATGACTCTG CTCTCACCATTATTGTCAATCCTATGGAGTCCTACCAGAACCAGCAGACCTGTGTGGCAGGGGTGGCTGG TGGCCAGCAAGAGGAAGAGGACAGCAGTGACTCGGAAGCAGCCGACTCCCCCAGCAGTGATGAGAGACGC ATCATTGAGAGCCCCCCACACCGCTATTGA
Translation (919 aa):
MENDNTVLLNPPLFALDKDAPLRYAGEICGFRLHGSGVPFEAVILDKATGEGLIRAKEPVDCEAQKEHTF TIQAYDCGEGPDGTNTKKSHKATVHVRVNDVNEFAPVFVERLYRAAVTEGKLYDRILRVEAIDGDCSPQY SQICYYEILTPNTPFLIDNDGNIENTEKLQYSGEKLYKFTVTAYDCGKKRAADDAEVEIQVKPTCKPSWQ GWNKRIEYAPGAGSLALFPGIRLETCDEPLWNIQATIELQTSHVAKGCDRDNYSERALRKLCGAATGEVD LLPMPGPNANWTAGLSVHYSQDSSLIYWFNGTQAVQVPLGGPAGLGSGPQDGFSDHFTLSFWMKHSVTPS KGKKEEETIVCNTVQNEDGYSHYSLTVHGCRIAFLYWPLLESARPVKFLWKLEQVCDDEWHHYALNLEFP TVTLYTDGISFDPALIHDNGLIHPPRREPALMIGACWTEEKNKEKKGGENSTDTASGDPLLIHHYFHGYL AGFSVRSGRLESREVIECLYACREGLDYRDFESLGKGMKVHVNPSQSLLTLEGDDVETFNHALQHVAYMN TLRFATPGVRPLRLTTAVKCFSEESCVSIPEVEGYVVVLQPDAPQILLSGTAHFARPAVDFEGPEGVPLF PDLQITCSISHQVEAKADESWQGTVTDTRMSDEIVHNLDGCEISLVGDDLDPERESLLLDMASLQQRGLE LTNTSAYLTIAGVETITVYEEILRQARYQLRHGAALYARKFRLSCSEMNGRYSSNEFIVEVNVLHSMNRV AHPSHVLSSQQFLHRGHQPPPEMAGHSLASSHRNSMVPSAATLIIVVCVGFLVLMVILGLVRIHSLHRRV SGTGGPSGASTDPKDPDLFWDDSALTIIVNPMESYQNQQTCVAGVAGGQQEEEDSSDSEAADSPSSDERR IIESPPHRY

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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