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Report for CCDS85119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85119.1 Public Mus musculus 6 Rpusd3 23 108 98 CCDS HistoryNCBI Gene:101122Re-query CCDS DB by CCDS ID:85119.1Re-query CCDS DB by GeneID:101122See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060634.13 ENSMUSP00000059057.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060634.13Link to Ensembl Protein Viewer:ENSMUSP00000059057.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000060634Re-query CCDS DB by Protein ID:ENSMUSP00000059057
Original member Current member NCBI NM_001346511.1 NP_001333440.1 Accepted alive Link to Nucleotide Sequence:NM_001346511.1Link to Protein Sequence:NP_001333440.1Re-query CCDS DB by Nucleotide ID:NM_001346511Re-query CCDS DB by Protein ID:NP_001333440Link to BLAST:NP_001333440.1

Chromosomal Locations for CCDS 85119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113415712 113415722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113416307 113416432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113416789 113416912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113417141 113417225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113417304 113417411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113417847 113417946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113418031 113418075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113418810 113418949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113419218 113419318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGGGAGCCCTGAGAGTTTTGCGTTATGTCTCTATGATCTGGCGGCCGGAGCTGGGGTCTTGCGCACGGC
AGAGGGATGCCGGCTTCGGCACCGAGGCCCGGCGTCCGTCTCAACCTCACCGCTCCAGCAAGCACAAGGA
CCTAGTCGAGGACCAGCCCTTCCCGGGGCTGCTGAGGACGGAGAACCTCGGCCTGGAGGAGCTGGCTCAT
GTCCTGAGGGCAGCTGTGGTGGATCAGAAAGGACCTCTGGTGACACTGAACAAGCCACAGGGTCTGCCTG
TGACAGGGAGACCAGGAGAGCTGACGCTGCTATCTGTGCTGCCGCAGCTGAGCCAGGCCCTGGGGCTCGA
ACACCAGGAGCTCCAGGTTGTGCGAGCACCTGGGAAGGAGGCCTCCGGACTTGTGCTCCTCTCCAGCTGT
CCCCAGACAGCAAGCCGCCTGCAGAAGTTCTTTATCCACTCAAGGAGAGCACAGAGACCCACAGCCACCT
ACTGTGCTGTCACTGATGGCATCCCTGAGCCTTCAGAGGGGACAGTCTGCATGCCTCTGAAGATGGAACA
AATGAATGACGTTGATCTTGCAGTCCCAGTGATGTCCCCATCTCGAAAGGACATCCAGGAAGGTGTCAAA
AGGACCCTCAGCCGTTTCCATGTGATGGCCACAGGCCGTGGCTGTGCCCTGGTCCAGCTGCAGCCACTGA
CAGCTGCAGGTACACATGGCTCTACAGCTCTGTCCAATTCTTGGGGACCACACTTATGCTGCTCGTGTGG
GCACCGTTCTGGGCCAGCGCTTTCTGTGGCCAGCCGAGACCACCAAGCCCCAGAGACAGGTCCTGGATGA

Translation (279 aa):
MGALRVLRYVSMIWRPELGSCARQRDAGFGTEARRPSQPHRSSKHKDLVEDQPFPGLLRTENLGLEELAH
VLRAAVVDQKGPLVTLNKPQGLPVTGRPGELTLLSVLPQLSQALGLEHQELQVVRAPGKEASGLVLLSSC
PQTASRLQKFFIHSRRAQRPTATYCAVTDGIPEPSEGTVCMPLKMEQMNDVDLAVPVMSPSRKDIQEGVK
RTLSRFHVMATGRGCALVQLQPLTAAGTHGSTALSNSWGPHLCCSCGHRSGPALSVASRDHQAPETGPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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