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Report for CCDS85071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85071.1 Public Mus musculus 6 Tet3 23 108 98 CCDS HistoryNCBI Gene:194388Re-query CCDS DB by CCDS ID:85071.1Re-query CCDS DB by GeneID:194388See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186548.6 ENSMUSP00000139630.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186548.6Link to Ensembl Protein Viewer:ENSMUSP00000139630.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186548Re-query CCDS DB by Protein ID:ENSMUSP00000139630
Original member Current member NCBI NM_001347313.1 NP_001334242.1 Accepted alive Link to Nucleotide Sequence:NM_001347313.1Link to Protein Sequence:NP_001334242.1Re-query CCDS DB by Nucleotide ID:NM_001347313Re-query CCDS DB by Protein ID:NP_001334242Link to BLAST:NP_001334242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334242.1 1803 Q8BG87-1 1803 100% 0 0

Chromosomal Locations for CCDS 85071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83368042 83369825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83370383 83370719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83373194 83373331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83373783 83373872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83375750 83375900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83376766 83376974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83379872 83379965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83385985 83386075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83402667 83404824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83441217 83441273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83454750 83455052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5412 nt):
ATGAGCCAGTTTCAGGTGCCCTTGGCGGTCCAGCCGGACCTGTCAGGACTTTATGATTTCCCGCAGGGCC
AGGTGATGGTAGGGGGCTTCCAGGGGCCTGGGCTTCCTATGGCTGGGAGTGAGACCCAACTGCGAGGGGG
TGGAGATGGGCGGAAGAAAAGGAAACGGTGTGGGACCTGCGATCCCTGCCGACGGCTGGAAAACTGTGGG
TCTTGTACCAGCTGCACCAATCGTCGCACACACCAGATCTGCAAACTCCGCAAGTGTGAGGTGCTGAAGA
AAAAAGCGGGGCTTCTTAAGGAGGTGGAAATAAATGCTCGTGAAGGAACGGGGCCCTGGGCACAAGGGGC
GACTGTCAAGACAGGCTCAGAGCTCAGCCCAGTTGATGGACCTGTTCCAGGTCAGATGGACTCAGGGCCA
GTGTACCATGGAGATTCAAGGCAGCTAAGCACCTCAGGGGCGCCGGTCAATGGTGCTAGAGAGCCCGCCG
GACCCGGTCTTCTGGGAGCTGCGGGTCCTTGGCGGGTAGACCAGAAGCCCGACTGGGAGGCTGCCTCAGG
CCCCACTCACGCTGCTCGTCTGGAAGATGCCCACGACCTGGTGGCCTTTTCGGCCGTGGCCGAAGCTGTG
TCATCTTACGGGGCCCTTAGTACCCGGCTCTATGAAACCTTCAACCGTGAGATGAGTCGTGAGGCTGGGA
GCAACGGCAGGGGCCCCCGGCCTGAGAGCTGCTCTGAGGGCAGTGAAGACCTGGACACGCTGCAGACAGC
CCTGGCCCTTGCAAGGCATGGCATGAAACCACCCAACTGCACCTGCGATGGCCCAGAGTGCCCCGACTTC
CTCGAGTGGCTGGAGGGCAAGATCAAGTCTATGGCCATGGAGGGAGGGCAGGGGCGGCCTAGGCTCCCAG
GCGCTCTGCCTCCCAGTGAGGCTGGCCTCCCAGCCCCTAGCACCAGACCGCCACTCCTTAGCTCTGAGGT
CCCCCAGGTACCTCCCCTGGAGGGCCTGCCTCTGTCCCAGAGCGCGCTGAGCATTGCCAAGGAAAAAAAC
ATCAGCCTGCAGACAGCCATCGCCATCGAGGCCCTCACACAGCTCTCCTCCGCCCTCCCTCAGCCTTCTC
ATTCCACCTCCCAGGCTTCTTGTCCACTCCCTGAGGCCTTGTCCCCTTCTGCCCCTTTCAGGTCTCCCCA
GTCCTACCTCCGGGCCCCCTCATGGCCTGTGGTTCCCCCAGAGGAACATCCATCCTTTGCTCCTGACAGC
CCAGCCTTCCCTCCAGCAACCCCAAGACCTGAGTTTTCTGAAGCGTGGGGCACTGACACCCCCCCAGCGA
CACCCCGGAACTCCTGGCCTGTACCTCGCCCAAGCCCTGACCCTATGGCAGAACTGGAGCAGCTATTGGG
CAGCGCCAGTGATTACATCCAGTCAGTATTCAAGCGGCCTGAGGCCCTGCCCACCAAGCCCAAGGTCAAG
GTTGAGGCCCCCTCTTCTTCCCCTGCTCCGGTACCATCTCCTATTTCTCAGAGGGAGGCTCCCCTGCTGT
CTTCAGAGCCTGACACCCACCAGAAGGCCCAGACAGCCCTTCAGCAACATCTTCATCACAAGCGCAACCT
ATTCTTGGAACAGGCCCAAGATGCCTCCTTCCCTACTTCCACAGAGCCTCAGGCTCCTGGTTGGTGGGCC
CCTCCCGGCTCACCTGCCCCAAGGCCTCCTGACAAACCACCCAAGGAAAAGAAAAAGAAGCCCCCCACCC
CTGCTGGAGGTCCCGTGGGAGCAGAGAAAACCACCCCTGGGATCAAGACCAGTGTCCGAAAGCCCATTCA
GATCAAGAAATCCAGGTCCAGGGACATGCAGCCCCTCTTCCTGCCTGTTAGGCAGATTGTTCTGGAAGGG
CTAAAACCCCAAGCCTCAGAAGGACAGGCACCGTTACCCGCCCAGCTCTCTGTCCCACCTCCTGCCTCCC
AGGGTGCTGCATCCCAGAGCTGTGCCACCCCTCTAACCCCAGAACCTTCTCTTGCGCTATTTGCACCTAG
TCCCTCCGGGGACAGCCTGCTGCCCCCTACTCAGGAAATGAGATCCCCCAGCCCCATGGTAGCCCTGCAG
TCAGGCTCCACTGGTGGCCCCCTTCCCCCTGCCGATGACAAGCTGGAGGAGCTCATCCGGCAATTTGAGG
CTGAATTTGGGGATAGCTTTGGGCTTCCCGGCCCACCTTCGGTGCCCATTCAAGAACCTGAAAACCAATC
AACATGTCTCCCAGCTCCGGAGAGCCCTTTTGCCACCCGCTCCCCCAAGAAGATCAAGATCGAGTCCTCA
GGGGCCGTGACTGTGCTCTCAACTACCTGCTTCCATTCAGAAGAGGGGGGACAGGAGGCCACGCCCACCA
AGGCTGAGAACCCACTCACACCAACCCTCAGTGGCTTCTTGGAGTCACCTCTAAAGTACCTAGACACACC
TACTAAGAGTCTGCTGGACACACCGGCCAAGAAGGCTCAGTCCGAGTTCCCTACCTGCGATTGTGTCGAA
CAAATAGTGGAGAAAGATGAAGGCCCATATTACACTCACCTGGGATCTGGCCCCACAGTAGCTTCTATCC
GGGAACTCATGGAGGATCGGTATGGAGAAAAGGGGAAAGCTATCCGGATTGAGAAGGTCATCTACACGGG
CAAGGAGGGGAAGAGTTCTCGAGGCTGTCCCATCGCCAAGTGGGTGATCCGAAGACACACACTGGAGGAG
AAGCTGCTGTGCCTGGTGCGGCATCGGGCAGGCCACCATTGTCAGAACGCCGTGATTGTTATCTTGATCC
TGGCCTGGGAGGGCATCCCTCGAAGCCTTGGGGACACCCTCTACCAGGAGCTTACTGATACCCTCCGGAA
GTATGGCAACCCTACCAGCCGGAGATGTGGCCTCAATGATGACCGGACCTGTGCTTGCCAAGGCAAAGAC
CCTAACACCTGCGGTGCCTCCTTCTCCTTCGGCTGTTCCTGGAGCATGTACTTCAACGGCTGCAAATATG
CTCGGAGCAAGACGCCACGAAAGTTCCGCCTCACGGGAGACAATCCGAAGGAGGAGGAGGTGCTCCGGAA
TAGCTTTCAGGATCTGGCCACTGAAGTTGCTCCCCTCTACAAGCGGCTCGCACCCCAGGCCTATCAGAAC
CAGGTGACCAATGAGGATGTGGCGATCGACTGCCGCCTGGGGCTGAAGGAAGGGAGACCCTTCTCAGGGG
TCACAGCCTGCATGGACTTCTGTGCCCACGCCCACAAGGACCAACATAACCTCTACAATGGGTGCACTGT
GGTCTGCACCCTGACCAAGGAAGACAATCGCTGCGTGGGCCAGATCCCTGAGGACGAGCAACTGCACGTG
CTGCCCCTCTACAAGATGGCCAGCACGGATGAGTTTGGCAGCGAGGAAAACCAGAACGCCAAGGTCAGTA
GTGGGGCCATCCAGGTGCTCACAGCATTCCCCAGAGAGGTCCGGCGGCTGCCTGAGCCTGCCAAGTCCTG
CCGCCAACGGCAGCTGGAAGCCAGGAAGGCGGCGGCCGAGAAGAAGAAGCTGCAGAAGGAGAAACTGAGC
ACGCCAGAGAAGATCAAGCAGGAGGCCCTGGAGTTGGCTGGAGTCACCACTGACCCAGGCCTGTCTCTGA
AGGGTGGATTGTCCCAGCAAAGCCTGAAGCCCTCCCTCAAGGTGGAGCCTCAGAACCACTTTAGCTCCTT
TAAGTACAGTGGCAATGCGGTGGTGGAAAGCTACTCGGTGCTGGGCAGCTGCCGGCCCTCCGACCCCTAC
AGCATGAGCAGTGTGTATTCCTACCATTCGCGCTATGCACAGCCTGGCCTGGCCTCTGTCAACGGCTTCC
ACTCCAAGTACACACTTCCCTCCTTTGGCTACTATGGCTTTCCATCAAGCAACCCTGTCTTCCCCTCCCA
GTTCCTGGGTCCCAGTGCCTGGGGGCATGGGGGCAGTGGAGGCAGTTTTGAGAAGAAGCCAGACCTCCAT
GCTCTACACAACAGCCTGAACCCAGCCTACGGTGGTGCTGAGTTTGCCGAGCTGCCAGGTCAGGCTGTTG
CCACAGACAACCACCACCCCATCCCTCACCACCAGCAGCCTGCTTACCCAGGCCCCAAGGAATATCTGCT
ACCCAAGGTCCCCCAGCTCCACCCAGCATCCAGGGACCCCTCTCCCTTTGCTCAGAGTTCCAGTTGCTAC
AACAGATCCATCAAGCAAGAGCCAATAGACCCTCTGACCCAGGCTGAGTCCATTCCCAGAGACTCTGCTA
AGATGAGTAGAACACCCTTGCCGGAAGCATCTCAGAATGGGGGACCCAGTCATCTGTGGGGACAGTACTC
AGGAGGCCCAAGCATGTCCCCGAAGAGGACTAACAGTGTAGGTGGCAACTGGGGCGTGTTCCCTCCGGGG
GAGAGCCCTACCATTGTTCCCGACAAGCTCAATTCTTTTGGGGCCAGCTGTCTCACTCCTTCACACTTCC
CAGAAAGCCAGTGGGGACTGTTCACTGGTGAAGGCCAGCAGTCGGCCCCCCATGCTGGAGCACGGCTTCG
AGGCAAGCCATGGAGCCCCTGCAAGTTTGGGAACGGCACCTCTGCCTTGACTGGTCCCAGCCTAACTGAG
AAGCCATGGGGGATGGGAACCGGGGATTTCAACCCCGCCCTGAAAGGTGGACCTGGGTTCCAAGACAAGT
TGTGGAATCCTGTGAAGGTGGAGGAGGGCAGGATTCCCACACCGGGGGCCAACCCGCTAGACAAAGCCTG
GCAAGCCTTTGGCATGCCCTTGAGCTCCAACGAGAAGCTATTTGGGGCCCTGAAGTCAGAGGAGAAACTG
TGGGATCCCTTCAGCCTGGAGGAGGGGACAGCTGAGGAGCCCCCCAGCAAGGGGGTGGTGAAGGAAGAGA
AGAGTGGACCCACAGTGGAAGAGGACGAGGAGGAACTGTGGTCGGACAGTGAACACAACTTCCTGGATGA
GAACATAGGCGGGGTGGCCGTGGCCCCCGCCCATTGCTCCATCCTCATCGAGTGTGCCCGGCGAGAGCTG
CATGCCACCACTCCACTCAAAAAACCCAACCGCTGCCACCCCACCCGCATCTCGCTGGTCTTCTACCAAC
ACAAGAACCTCAACCAGCCCAACCACGGGCTGGCGCTCTGGGAGGCCAAGATGAAGCAGCTGGCGGAACG
GGCGCGGCAGCGGCAAGAGGAGGCCGCACGCCTGGGCCTGGGCCAGCAGGAGGCCAAGCTCTACGGGAAG
AAGCGAAAATGGGGGGGTGCTATGGTGGCTGAGCCCCAGCACAAAGAAAAGAAGGGGGCTATCCCTACCC
GGCAGGCGCTGGCCATGCCCACAGACTCCGCGGTCACCGTGTCCTCTTACGCCTACACAAAGGTCACTGG
CCCCTACAGCCGCTGGATCTAG

Translation (1803 aa):
MSQFQVPLAVQPDLSGLYDFPQGQVMVGGFQGPGLPMAGSETQLRGGGDGRKKRKRCGTCDPCRRLENCG
SCTSCTNRRTHQICKLRKCEVLKKKAGLLKEVEINAREGTGPWAQGATVKTGSELSPVDGPVPGQMDSGP
VYHGDSRQLSTSGAPVNGAREPAGPGLLGAAGPWRVDQKPDWEAASGPTHAARLEDAHDLVAFSAVAEAV
SSYGALSTRLYETFNREMSREAGSNGRGPRPESCSEGSEDLDTLQTALALARHGMKPPNCTCDGPECPDF
LEWLEGKIKSMAMEGGQGRPRLPGALPPSEAGLPAPSTRPPLLSSEVPQVPPLEGLPLSQSALSIAKEKN
ISLQTAIAIEALTQLSSALPQPSHSTSQASCPLPEALSPSAPFRSPQSYLRAPSWPVVPPEEHPSFAPDS
PAFPPATPRPEFSEAWGTDTPPATPRNSWPVPRPSPDPMAELEQLLGSASDYIQSVFKRPEALPTKPKVK
VEAPSSSPAPVPSPISQREAPLLSSEPDTHQKAQTALQQHLHHKRNLFLEQAQDASFPTSTEPQAPGWWA
PPGSPAPRPPDKPPKEKKKKPPTPAGGPVGAEKTTPGIKTSVRKPIQIKKSRSRDMQPLFLPVRQIVLEG
LKPQASEGQAPLPAQLSVPPPASQGAASQSCATPLTPEPSLALFAPSPSGDSLLPPTQEMRSPSPMVALQ
SGSTGGPLPPADDKLEELIRQFEAEFGDSFGLPGPPSVPIQEPENQSTCLPAPESPFATRSPKKIKIESS
GAVTVLSTTCFHSEEGGQEATPTKAENPLTPTLSGFLESPLKYLDTPTKSLLDTPAKKAQSEFPTCDCVE
QIVEKDEGPYYTHLGSGPTVASIRELMEDRYGEKGKAIRIEKVIYTGKEGKSSRGCPIAKWVIRRHTLEE
KLLCLVRHRAGHHCQNAVIVILILAWEGIPRSLGDTLYQELTDTLRKYGNPTSRRCGLNDDRTCACQGKD
PNTCGASFSFGCSWSMYFNGCKYARSKTPRKFRLTGDNPKEEEVLRNSFQDLATEVAPLYKRLAPQAYQN
QVTNEDVAIDCRLGLKEGRPFSGVTACMDFCAHAHKDQHNLYNGCTVVCTLTKEDNRCVGQIPEDEQLHV
LPLYKMASTDEFGSEENQNAKVSSGAIQVLTAFPREVRRLPEPAKSCRQRQLEARKAAAEKKKLQKEKLS
TPEKIKQEALELAGVTTDPGLSLKGGLSQQSLKPSLKVEPQNHFSSFKYSGNAVVESYSVLGSCRPSDPY
SMSSVYSYHSRYAQPGLASVNGFHSKYTLPSFGYYGFPSSNPVFPSQFLGPSAWGHGGSGGSFEKKPDLH
ALHNSLNPAYGGAEFAELPGQAVATDNHHPIPHHQQPAYPGPKEYLLPKVPQLHPASRDPSPFAQSSSCY
NRSIKQEPIDPLTQAESIPRDSAKMSRTPLPEASQNGGPSHLWGQYSGGPSMSPKRTNSVGGNWGVFPPG
ESPTIVPDKLNSFGASCLTPSHFPESQWGLFTGEGQQSAPHAGARLRGKPWSPCKFGNGTSALTGPSLTE
KPWGMGTGDFNPALKGGPGFQDKLWNPVKVEEGRIPTPGANPLDKAWQAFGMPLSSNEKLFGALKSEEKL
WDPFSLEEGTAEEPPSKGVVKEEKSGPTVEEDEEELWSDSEHNFLDENIGGVAVAPAHCSILIECARREL
HATTPLKKPNRCHPTRISLVFYQHKNLNQPNHGLALWEAKMKQLAERARQRQEEAARLGLGQQEAKLYGK
KRKWGGAMVAEPQHKEKKGAIPTRQALAMPTDSAVTVSSYAYTKVTGPYSRWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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