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Report for CCDS84952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84952.1 Public Mus musculus 5 Sh2b3 23 108 98 CCDS HistoryNCBI Gene:16923Re-query CCDS DB by CCDS ID:84952.1Re-query CCDS DB by GeneID:16923See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118580.5 ENSMUSP00000113808.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118580.5Link to Ensembl Protein Viewer:ENSMUSP00000113808.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118580Re-query CCDS DB by Protein ID:ENSMUSP00000113808
Original member NCBI NM_001306128.1 NP_001293057.1 Updated not alive Link to Nucleotide Sequence:NM_001306128.1Link to Protein Sequence:NP_001293057.1Re-query CCDS DB by Nucleotide ID:NM_001306128Re-query CCDS DB by Protein ID:NP_001293057
Current member NCBI NM_001306128.2 NP_001293057.1 Accepted alive Link to Nucleotide Sequence:NM_001306128.2Link to Protein Sequence:NP_001293057.1Re-query CCDS DB by Nucleotide ID:NM_001306128Re-query CCDS DB by Protein ID:NP_001293057Link to BLAST:NP_001293057.1

Chromosomal Locations for CCDS 84952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121817771 121818093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818216 121818387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818465 121818649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818760 121818854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121818939 121819030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121819107 121819208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121828402 121829049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1617 nt):
ATGAACGAGCCCACCGTGCAGCCGTCCCGCACATCCTCCGCACCCGCCTCGCCGGCATCCCCACGCGGCT
GGAGCGACTTCTGCGAGCAGCACGCAGCAGCGGCGGCCCGGGAGCTGGCCCGCCAGTACTGGTTGTTTGC
GCGCGCGCACCCACAGCCGCCGCGCGCGGACCTGGTGTCGCTGCAGTTCGCGGAGCTCTTCCAGCGCCAC
TTCTGCCGGGAGGTGCGCGAGAGCCTCGCAGGACCGCCGGGTCACGACTACCGCGCCACTGCTCCGCCCC
GCCCCGCGCTGCCCAAGGCACGCAGCTCCGAGGACCTGGGCCCGCGGCCCGCCTGTGCCCTGCAGCACCT
GCGCCGCGGCCTGCGCCAGCTCTTCCGCCGCCGCTCGGCAGGGGAGCTGCCCGGGGCTACCAGTGACACC
AATGACATCGACACCACCGCAGCCAGCAGGCCGGGCCCGGCCCGCAAGTTGCTACCCTGGGGCCTGCGAG
AGCCGCCCACTGAGGCGCTCAAGGAGGTCGTATTGCGCTATAGCCTGGCGGACGAGGCAGCAATGGACAG
CGGCGCACGCTGGCAGCGGGGTCGCCTGGTGCTTCGGTCTCCAGGTCCGGGCCACAGCCACTTTCTGCAG
CTCTTCGATCCGCCCAAGAGCTCAAAGCCCAAGCTCCAAGAGGCCTGTTCCAGCATCCGGGAGGTCCGAC
CATGTACACGCCTGGAGATGCCTGACAACCTCTACACCTTTGTGTTGAAGGTGCAGGACCAGACAGACAT
CATCTTTGAGGTGGGAGATGAACAGCAGCTGAACTCATGGCTGGCAGAGCTCAGGGCAAGCACAGGCCTT
GGGCTGGAGCACCCGGACACCGAGTTACCTCTTTCCTTAGCGGCAGAGCCTGGCCCAGCTAGATCCCCAA
GGGGAAGCACTGACTCCCTGGACCAAGCCTGCCAGAAAACAGATCACTTCCTATCCTGCTACCCCTGGTT
CCACGGCCCCATCTCCAGGGTGAGGGCTGCACAGCTGGTCCAGCTCCAGGGCCCTGATGCCCACGGCGTG
TTCCTGGTGCGGCAGAGTGAGTCCCGGAGAGGAGAGTATGTACTCACATTCAACTTACAGGGCAGAGCCA
AGCACTTACGCCTGGTGCTCACAGAGCGTGGACAGTGCCGGGTGCAACACCTGCACTTCCCCTCGGTGGT
AGATATGCTCCGCCACTTCCAGCGTTCTCCTATCCCACTGGAATGTGGAGCAGCTTGTGACGTCCGACTC
TCTGGCTATGTGGTAGTCCTCTCTCAGGCACCAGGTTCCTCCAACACCGTCCTCTTCCCTTTTTCCCTTC
CTCACTGGGATTCGGAGCTGGGTCATCCCCACCTCAGCTCTGTTGGCTGTCCCCCCAGCCATGGTGCAGA
GGCTCTCCCTGGCCAAGTGACACCACCTGAGCAGATCTTCCACCTGGTGCCTTCTCCTGAGGAACTGGCC
AACAGTCTGCGGCAGCTGGAGCTCGAGTCTGTGAGCAGTGCCCGGGACTCGGACTATGACATGGACTCCT
CTTCACGGGGCCACCTTCGGGCCATTGACAACCAGTACACCCCTCTCTCACAGCTGTGCAGAGAGGCAGA
CGTGTGA

Translation (538 aa):
MNEPTVQPSRTSSAPASPASPRGWSDFCEQHAAAAARELARQYWLFARAHPQPPRADLVSLQFAELFQRH
FCREVRESLAGPPGHDYRATAPPRPALPKARSSEDLGPRPACALQHLRRGLRQLFRRRSAGELPGATSDT
NDIDTTAASRPGPARKLLPWGLREPPTEALKEVVLRYSLADEAAMDSGARWQRGRLVLRSPGPGHSHFLQ
LFDPPKSSKPKLQEACSSIREVRPCTRLEMPDNLYTFVLKVQDQTDIIFEVGDEQQLNSWLAELRASTGL
GLEHPDTELPLSLAAEPGPARSPRGSTDSLDQACQKTDHFLSCYPWFHGPISRVRAAQLVQLQGPDAHGV
FLVRQSESRRGEYVLTFNLQGRAKHLRLVLTERGQCRVQHLHFPSVVDMLRHFQRSPIPLECGAACDVRL
SGYVVVLSQAPGSSNTVLFPFSLPHWDSELGHPHLSSVGCPPSHGAEALPGQVTPPEQIFHLVPSPEELA
NSLRQLELESVSSARDSDYDMDSSSRGHLRAIDNQYTPLSQLCREADV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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