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Report for CCDS84904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84904.1 Public Mus musculus 5 Art3 23 108 98 CCDS HistoryNCBI Gene:109979Re-query CCDS DB by CCDS ID:84904.1Re-query CCDS DB by GeneID:109979See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119587.7 ENSMUSP00000112648.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119587.7Link to Ensembl Protein Viewer:ENSMUSP00000112648.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119587Re-query CCDS DB by Protein ID:ENSMUSP00000112648
Original member Current member NCBI NM_001310665.1 NP_001297594.1 Accepted alive Link to Nucleotide Sequence:NM_001310665.1Link to Protein Sequence:NP_001297594.1Re-query CCDS DB by Nucleotide ID:NM_001310665Re-query CCDS DB by Protein ID:NP_001297594Link to BLAST:NP_001297594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297594.1 350 Q8R2G4-7 350 100% 0 0

Chromosomal Locations for CCDS 84904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92388143 92388211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92392469 92393177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92401996 92402028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92409270 92409302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92411142 92411195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92412165 92412194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92414242 92414366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGAAGATGGGACATTTTGAAATGGTCACCACGCTGCTGGCAGCCGCAGTTCTAATGGACATCTTCCAGG
TGAAGGCGGAAGTGTTAGACATGGCAGAGAACGCGTTTGACGACGAATACCTGAAGTGCAAAAGCAGAAT
GGAATCGAAGTATATTCCGCAGATGAAGAGGGAGGAGTGGGCAAACGATGCGCTCCTGCGGATGGTGTGG
GACAATGCGGAGATCCAGTGGGAAGCGCGGAAGGCTCAGCTCTTCCTCCCTAGAAACTTCAAGGACACCT
ATGGCATAGCTCTGACGGCCTACGTGAATGAGGCTCAAGAGCAGACTTCCTTCTACCACACATTCAGCAG
CGCTGTGAAGATGGCCGGCCTGTCCCGAAGACGGTACATCTATAACTTCCCGTTCAAGGCTTTTCATTTT
TACTTGGTGAGAGCCCTGCAGCTGCTGAGACGACCTTGCGAGAAAAGTTACAAAACTGTGGTGTACAGCA
CAAGCCCAGACATTTCATTCACATTCGGAGAGCAAAACCAAGCCAGGCTGGGTAACTTCACGTTGGCGTA
TTCAGCCAAACCGGAGACAGCCGACAACCAACGGGTGCTAACCATCCAGACCTGCTTTGGAGTCGCCGTG
GGAAAGTTTCTTAATAAAGAAGACGACAGCGTTGTTTTAATACCTCTGAGTGAGGTTTTTCAAGTGTCGA
GGAAAGGAACTAGCAACGACCTTGTCCTTCAGAGCATAAACAGTACCTGCAGCTACTACGAGTGCGCATT
CCTCGGGGGTCTGAAAACAGAAAATTGTATCGCGAACGCAGGTAGGAACAACCTTGACCCTGACAGAATG
CCAGAAATTAAAGTGCTACAAACAGAGGAAAATCCTCTCCTGCCGGATGAAAAGCCTGACAGAAGTCGAG
GAAAGGCCAACAATCCTACTCCAGGTCTGGTTCCAGGTCCGAAATCCCATCCCTCTGCATCCTCTGGCAA
TACGCTCCTTCCATCAGTCATGGCATCCACCATTTTACTCGTTGCTTCTGCTGTAAACTTCATCGAGCTA
TAG

Translation (350 aa):
MKMGHFEMVTTLLAAAVLMDIFQVKAEVLDMAENAFDDEYLKCKSRMESKYIPQMKREEWANDALLRMVW
DNAEIQWEARKAQLFLPRNFKDTYGIALTAYVNEAQEQTSFYHTFSSAVKMAGLSRRRYIYNFPFKAFHF
YLVRALQLLRRPCEKSYKTVVYSTSPDISFTFGEQNQARLGNFTLAYSAKPETADNQRVLTIQTCFGVAV
GKFLNKEDDSVVLIPLSEVFQVSRKGTSNDLVLQSINSTCSYYECAFLGGLKTENCIANAGRNNLDPDRM
PEIKVLQTEENPLLPDEKPDRSRGKANNPTPGLVPGPKSHPSASSGNTLLPSVMASTILLVASAVNFIEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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