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Report for CCDS84878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84878.1 Public Mus musculus 5 Ldb2 23 108 98 CCDS HistoryNCBI Gene:16826Re-query CCDS DB by CCDS ID:84878.1Re-query CCDS DB by GeneID:16826See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199261.1 ENSMUSP00000143289.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199261.1Link to Ensembl Protein Viewer:ENSMUSP00000143289.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199261Re-query CCDS DB by Protein ID:ENSMUSP00000143289
Original member Current member NCBI NM_001347349.1 NP_001334278.1 Accepted alive Link to Nucleotide Sequence:NM_001347349.1Link to Protein Sequence:NP_001334278.1Re-query CCDS DB by Nucleotide ID:NM_001347349Re-query CCDS DB by Protein ID:NP_001334278Link to BLAST:NP_001334278.1

Chromosomal Locations for CCDS 84878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 44473282 44473512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44479099 44479244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44480226 44480349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44532661 44532744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44535038 44535160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44541687 44541859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44669357 44669459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44799362 44799493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGTCCAGCACACCACATGACCCCTTCTATTCTTCTCCTTTCGGCCCATTTTATAGGAGACATACACCAT
ACATGGTACAGCCAGAGTACCGAATCTATGAGATGAACAAGAGACTGCAGTCTCGTACAGAGGACAGTGA
CAACCTCTGGTGGGATGCGTTTGCCACTGAATTTTTTGAAGATGATGCCACATTAACACTTTCATTTTGT
TTGGAAGACGGACCAAAGCGATACACTATCGGCAGGACCCTCATTCCCCGTTATTTTAGCACCGTATTTG
AAGGAGGGGTGACAGACCTGTACTACATCCTTAAACACTCAAAGGAGTCATATCACAACTCATCCATCAC
AGTAGACTGCGACCAGTGTGCCATGGTCACACAGCATGGGAAGCCCATGTTTACCAAGGTATGCACAGAA
GGCAGGCTGATCTTGGAATTCACATTTGATGACCTCATGAGAATAAAAACGTGGCACTTTACCATTAGAC
AGTACAGGGAGCTGGTCCCCAGAAGCATACTAGCCATGCACGCACAAGATCCTCAGGTCCTGGATCAGCT
GTCCAAAAATATCACCAGGATGGGTCTCACAAACTTCACCCTCAACTACCTCAGGTTGTGTGTAATACTG
GAGCCAATGCAGGAACTGATGTCGAGACACAAAACCTACAACCTCAGTCCCCGAGACTGCCTGAAGACCT
GTCTGTTTCAGAAGTGGCAGCGGATGGTGGCCCCGCCAGCAGAACCCACAAGGCAACCGACAACCAAAAG
GAGAAAACGAAAAAACTCCACAAGCAGCACGTCCAATAGCAGTGCCGGGAACACGACCAACAGTGCCGGC
AGCAAGAAGAAGACCCCGGCGGCAAGCCTGAGCCTGGCCACTCAGGATGTGATGGTGGTAGGAGAGCCAA
CTCTGATGGGAGGTGAGTTTGGGGACGAGGACGAAAGGCTAATCACTAGATTAGAAAACACGCAGTATGA
TGCGGCCAACGGCATGGACGACGAAGAAGACTTCAACAATTCACCTGCCCTGGGGAACAACAGCCCGTGG
AACAGTAAACCTCCCGCCACGCAAGAGACCAAATCAGAAAACGCCCCACCCCAGGCTTCCCAGTAA

Translation (371 aa):
MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFC
LEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTE
GRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVIL
EPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNTTNSAG
SKKKTPAASLSLATQDVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPW
NSKPPATQETKSENAPPQASQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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