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Report for CCDS84197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84197.1 Public Mus musculus 15 Atf7 23 108 98 CCDS HistoryNCBI Gene:223922Re-query CCDS DB by CCDS ID:84197.1Re-query CCDS DB by GeneID:223922See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84197.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184906.7 ENSMUSP00000139243.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184906.7Link to Ensembl Protein Viewer:ENSMUSP00000139243.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184906Re-query CCDS DB by Protein ID:ENSMUSP00000139243
Original member Current member NCBI NM_001310070.1 NP_001296999.1 Accepted alive Link to Nucleotide Sequence:NM_001310070.1Link to Protein Sequence:NP_001296999.1Re-query CCDS DB by Nucleotide ID:NM_001310070Re-query CCDS DB by Protein ID:NP_001296999Link to BLAST:NP_001296999.1

Chromosomal Locations for CCDS 84197.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102526072 102526112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102538183 102538291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102540740 102540937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102546405 102546557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102547154 102547267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102547773 102547872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102551404 102551561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102553784 102553921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102557460 102557578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102563314 102563410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102593672 102593719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGGAGACGACAGACCGTTTGTGTGCAGTGCCCCGGGCTGTGGACAGAGATTTACAAATGAGGACCACC
TGGCAGTTCATAAACATAAGCATGAGATGACACTGAAATTTGGCCCAGCCCGAACGGACTCAGTCATCAT
TGCAGATCAAACGCCTACTCCAACTAGATTCCTGAAGAACTGTGAGGAAGTGGGGCTCTTCAATGAACTA
GCTAGCTCCTTTGAACATGAATTTAAGAAAGCTTCTGATGACGATGAGAAAAAGGGTGCTGCTGGGCCTC
TTGACATGTCTCTGCCTTCTACACCAGACATCAAAATCAAGGAAGAAGAGCCAGTGGAAGTAGACTCATC
GCCCCCTGACAGTCCTGCTTCTAGCCCCTGTTCCCCACCACTGAAGGAGAAGGAAGTTACCACAAAACCG
GTTGTGATCTCTACCCCTACACCTACCATTGTACGTCCTGGCTCCCTGCCTCTCCACTTAGGTTATGATC
CACTTCATCCAACTCTTCCTTCCCCAACCTCTGTCATCACACAGGCTCCACCATCCAACAGGCAAATAGG
ATCTCCTACTGGCTCCCTCCCTCTCGTCATGCATCTTGCTAATGGACAGACCATGCCTATGTTGCCAGGG
CCTCCAGTACAGATGCCTTCTGTTATTTCGCTGGCCAGACCTGTGTCCATGGTGCCCAACATTCCTGGTA
TACCTGGCCCACCGGTTAACAACAGTGGCTCCATTTCTCCCTCTGGCCACCCTATGCCGTCAGAAGCCAA
AATGAGACTAAAAGCCACGCTGACCCATCAAGTTTCTTCAATCAATGGAGGTTGTGGAATGGTGGTGGGT
ACTGCAAGCACCATGGTGACTGCCCGTCCAGAGCAAAACCAGATCCTCATCCAGCACCCAGATGCCCCAT
CCCCTGCCCAGCCACAGGTCTCTCCAGCTCAGCCCACCCCTAGCACTGGGGGACGGCGACGGCGTACAGT
GGATGAAGATCCAGATGAGCGGCGGCAGCGGTTTTTAGAGCGAAACAGAGCTGCAGCCTCTCGATGCCGG
CAAAAGCGGAAACTGTGGGTGTCCTCCCTGGAAAAGAAGGCAGAAGAACTTACTTCTCAGAACATTCAGC
TGAGTAATGAAGTCACATTACTACGCAATGAGGTGGCTCAGCTGAAGCAGCTACTGTTAGCTCATAAAGA
TTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTACCTAGAACATCAGAAACCTGATCTAGAAGGT
CTCCCTCTGCAGTAG

Translation (424 aa):
MGDDRPFVCSAPGCGQRFTNEDHLAVHKHKHEMTLKFGPARTDSVIIADQTPTPTRFLKNCEEVGLFNEL
ASSFEHEFKKASDDDEKKGAAGPLDMSLPSTPDIKIKEEEPVEVDSSPPDSPASSPCSPPLKEKEVTTKP
VVISTPTPTIVRPGSLPLHLGYDPLHPTLPSPTSVITQAPPSNRQIGSPTGSLPLVMHLANGQTMPMLPG
PPVQMPSVISLARPVSMVPNIPGIPGPPVNNSGSISPSGHPMPSEAKMRLKATLTHQVSSINGGCGMVVG
TASTMVTARPEQNQILIQHPDAPSPAQPQVSPAQPTPSTGGRRRRTVDEDPDERRQRFLERNRAAASRCR
QKRKLWVSSLEKKAEELTSQNIQLSNEVTLLRNEVAQLKQLLLAHKDCPVTALQKKTQGYLEHQKPDLEG
LPLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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