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Report for CCDS84163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84163.1 Public Mus musculus 15 Spef2 23 108 98 CCDS HistoryNCBI Gene:320277Re-query CCDS DB by CCDS ID:84163.1Re-query CCDS DB by GeneID:320277See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159368.1 ENSMUSP00000124723.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159368.1Link to Ensembl Protein Viewer:ENSMUSP00000124723.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159368Re-query CCDS DB by Protein ID:ENSMUSP00000124723
Original member Current member NCBI NM_001305044.1 NP_001291973.1 Accepted alive Link to Nucleotide Sequence:NM_001305044.1Link to Protein Sequence:NP_001291973.1Re-query CCDS DB by Nucleotide ID:NM_001305044Re-query CCDS DB by Protein ID:NP_001291973Link to BLAST:NP_001291973.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291973.1 456 Q8C9J3-3 456 100% 0 0

Chromosomal Locations for CCDS 84163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 9704355 9704541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9713101 9713288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9716332 9716520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9717451 9717637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9723594 9723658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9725115 9725255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9729617 9729869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9740512 9740614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9748712 9748769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGTCGGAAATCCTGTGCCAGTGGCTCAACCAGGAGTTGAGGGTGTCCCGGACCGTGAGTCCCAAGTCAT
TTGCAAAGGCATTTTCTAATGGCTATCTAATTGGAGAAGTTCTGTTCAAGTTTGAACTTCAGAGTGATTT
TGCAGAATTTTCAGAGAGCAGGGGTTCAACAGCCAAGCTTAACAATTTCTCCCGCTTGCAACCAACACTT
CACCTGCTGGGTTTGCAGTTTGATCAGAATGTGGCTCAAAGCATCATCACAGAGAAGCCTGGGGCAGCAA
CCAAACTTCTGTATCAGTTGTACATTGCTCTTCAGAAAAAGAAGAAAACAGGGCTGACTGGACTAGAGAT
ACAAACCATGCAACCCCAGACAAACTTGAGGCTTCAGACCCTCAAAAGTGAGGCTTTTCGAGAGCAACGC
TTAAACAGAAGACGACAAAATGAGATAATGGCCAAAATCCAGGCAGCCATTATACAGATCCCCAAGCCTG
AATCCAACCGTACTTTGAAAGCTATTGAGGCTCAAAAACTGATGAAAAAGAAAAAGGAGGCAGAGGACGT
GGCCAATGAGATTAAGAAATTTGAAGCACTAATTAAAAAGGATCTCCAAATTAAAGAAAGTGTATCCAAG
ACTTCTTTAGAAACAACAGACCAGACAACTGCAGAACTGCTCAACACTTATTCAGATGATGACTACATTA
AAAAGATCCAGAAACGCCTAGAAGAAGACGCTTTCGCACGCGAGCAAAGGGAAAAAAGACGACGCAGATT
GTTGATGGATCAGCTAATGGCCCATGAAGCACAGGAGGAGGCCTATCGGGAAGAGCAGCTCATTCACCGG
CTCATGCGCCAGTCCCAGCAGGAGCGCAGGATTGCTGTGCAGCTCATGCATGTTCGCCACGAGAAGGAAG
TTTTGTGGCAAAATAGAATTTTCCGAGAGAAACAATTTGAAGAAAGACGACTTAAGGATTTCCAGGATGC
TCTTGATAGAGAAGCGGCTCTTGCCAAACAAGCCAAGATTGATTTTGCAGAACAAACCTTGAGGGAGAAG
GAAATTCATGAAAAGATCTCTGTGGAAAGAGCCCAACAGCGTTATAAGAAGCATTATGGGATATGTGCAG
AGATTTTGGATCAAATGCTAGATTTGTGCACGAAGGTGGCAGACTATAGGTTGCTGACAAATAATCTTAT
TCCACATAAGATGATGCACGATTGGAAAGAACTGTTTTTTAGTGGAATTCCCATATATGAACAGACTTCT
CTTACACATGGACAAACAGAACCCACTGAGGATCACCGTGCAGAAGTGAAGAAAAGGAACTTACTCGATA
GCAAAGATTATGAAGATTATAAGGTACATACTAATATGTAA

Translation (456 aa):
MSEILCQWLNQELRVSRTVSPKSFAKAFSNGYLIGEVLFKFELQSDFAEFSESRGSTAKLNNFSRLQPTL
HLLGLQFDQNVAQSIITEKPGAATKLLYQLYIALQKKKKTGLTGLEIQTMQPQTNLRLQTLKSEAFREQR
LNRRRQNEIMAKIQAAIIQIPKPESNRTLKAIEAQKLMKKKKEAEDVANEIKKFEALIKKDLQIKESVSK
TSLETTDQTTAELLNTYSDDDYIKKIQKRLEEDAFAREQREKRRRRLLMDQLMAHEAQEEAYREEQLIHR
LMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQFEERRLKDFQDALDREAALAKQAKIDFAEQTLREK
EIHEKISVERAQQRYKKHYGICAEILDQMLDLCTKVADYRLLTNNLIPHKMMHDWKELFFSGIPIYEQTS
LTHGQTEPTEDHRAEVKKRNLLDSKDYEDYKVHTNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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