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Report for CCDS84049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84049.1 Public Mus musculus 13 Scamp1 23 108 98 CCDS HistoryNCBI Gene:107767Re-query CCDS DB by CCDS ID:84049.1Re-query CCDS DB by GeneID:107767See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153558.7 ENSMUSP00000120053.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153558.7Link to Ensembl Protein Viewer:ENSMUSP00000120053.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153558Re-query CCDS DB by Protein ID:ENSMUSP00000120053
Original member Current member EBI ENSMUST00000152555.7 ENSMUSP00000123135.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152555.7Link to Ensembl Protein Viewer:ENSMUSP00000123135.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152555Re-query CCDS DB by Protein ID:ENSMUSP00000123135
Original member Current member NCBI NM_001346609.1 NP_001333538.1 Accepted alive Link to Nucleotide Sequence:NM_001346609.1Link to Protein Sequence:NP_001333538.1Re-query CCDS DB by Nucleotide ID:NM_001346609Re-query CCDS DB by Protein ID:NP_001333538Link to BLAST:NP_001333538.1

Chromosomal Locations for CCDS 84049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 94203999 94204163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94208136 94208253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94210577 94210678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94224895 94225054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94229714 94229842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94232072 94232180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94233082 94233159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGCCTAATGTACCCAACACCCAGCCAGCAATAATGAAGCCAACAGAGGAACATCCAGCTTACACACAGA
TCACAAAGGAACATGCCTTGGCTCAAGCTGAACTGCTCAAGCGCCAAGAAGAGCTGGAGAGAAAAGCTGC
AGAGTTGGATCGTCGTGAGCGCGAGATGCAGAACCTGAGCCAGCATGGGAGAAAAAATAATTGGCCTCCT
CTTCCTAGCAATTTTCCCGTGGGACCTTGTTTCTATCAAGACTTTTCTGTTGACATTCCTGTAGAATTCC
AGAAGACGGTGAAGCTTATGTACTACCTATGGATGTTCCATGCAGTGACCCTGTTTCTGAACATCTTCGG
ATGCTTGGCCTGGTTTTGTGTTGATTCCTCGAGAGCAGTCGACTTTGGGCTGAGCATCCTGTGGTTCCTG
CTCTTCACTCCCTGCTCCTTTGTCTGTTGGTACAGACCGCTGTACGGGGCCTTCAGGAGCGACAGTTCCT
TCAGGTTCTTTGTGTTCTTCTTCGTCTATATTTGTCAGTTTGCTGTCCATGTGCTCCAGGCTGCAGGATT
TCATAACTGGGGAAACTGTGGTTGGATCTCGTCCCTCACTGGTCTCAACAAGAACATTCCAGTCGGGATC
ATGATGATAATCATCGCAGCGCTCTTCACAGCGTCCGCGGTCATCTCGCTCGTCATGTTTAAAAAAGTGC
ATGGACTGTACCGCACAACAGGTGCTAGTTTTGAGAAGGCCCAGCAAGAGTTTGCAACGGGAGTGATGTC
CAATAAAACTGTTCAGACAGCGGCTGCAAACGCCGCCTCAACCGCAGCAACCAGCGCGGCGCAGAACGCC
TTCAAGGGTAACCAGATGTAG

Translation (286 aa):
MPNVPNTQPAIMKPTEEHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGRKNNWPP
LPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSSRAVDFGLSILWFL
LFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISSLTGLNKNIPVGI
MMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSNKTVQTAAANAASTAATSAAQNA
FKGNQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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