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Report for CCDS83991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83991.1 Public Mus musculus 12 Ttll5 23 108 98 CCDS HistoryNCBI Gene:320244Re-query CCDS DB by CCDS ID:83991.1Re-query CCDS DB by GeneID:320244See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83991.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040273.13 ENSMUSP00000039939.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040273.13Link to Ensembl Protein Viewer:ENSMUSP00000039939.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040273Re-query CCDS DB by Protein ID:ENSMUSP00000039939
Original member Current member NCBI NM_001347395.2 NP_001334324.1 Accepted alive Link to Nucleotide Sequence:NM_001347395.2Link to Protein Sequence:NP_001334324.1Re-query CCDS DB by Nucleotide ID:NM_001347395Re-query CCDS DB by Protein ID:NP_001334324Link to BLAST:NP_001334324.1

Chromosomal Locations for CCDS 83991.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85826551 85826624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85831895 85832001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85843778 85843860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85845247 85845353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85849251 85849381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85857380 85857462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85863564 85863633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85864525 85864609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85876491 85876592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85878387 85878478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85879368 85879475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85889159 85889240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85891021 85891082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85892116 85892210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85898993 85899106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85899393 85899484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85908793 85908855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85912552 85912590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85917675 85917832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85918931 85919237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85922958 85923078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85925640 85925786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85926802 85926905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85929864 85929991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85932725 85932808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85933282 85933674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85939326 85939510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85956566 85956720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85996001 85996196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86012648 86012862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86020521 86020603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86053143 86053165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3888 nt):
ATGCCAGTTGTGATGGCCCGGGACCTGGAGGAGACAGCATCGTCCTCAGAGGACGAGGACCTGGCCAACC
AAGAGGATCACCCATGTATTATGTGGACTGGAGGCTGCAGGAGAATTCCAGTTTTGGTTTTCCATGCTGA
GGCTATTTTGACAAAGGACAACAATATTCGAGTAATTGGAGAGCGTTATCATTTGTCTTATAAGATTGTG
AGAACGGACAGTCGCCTGGTGCGAAGCATTCTGACAGCCCATGGATTTCATGAAGTTCACCCGAGCAGCA
CTGACTATAATTTGATGTGGACAGGATCCCACCTAAAACCGTTCTTACTTCGAACCCTCTCTGAAGCACA
AAAGGTTAATCATTTCCCCAGGTCTTATGAACTAACCCGCAAGGACCGACTGTACAAAAACATCATTCGG
ATGCAGCACACTCATGGATTCAAAGCATTCCACATCCTCCCTCAGACCTTTCTCCTGCCAGCTGAGTATG
CAGAATTCTGTAATTCATATTCAAAGGACCGAGGACCTTGGATAGTAAAACCAGTGGCCTCTTCTAGGGG
GCGGGGCGTCTACTTGATCAACAACCCAAACCAGATCTCCCTGGAAGAGAACATCTTGGTCTCCCGTTAC
ATTAACAACCCCCTGCTCATAGATGATTTCAAGTTTGACGTGCGCCTCTATGTGCTCGTGACTTCCTATG
ATCCCCTTGTCATCTATCTCTATGAGGAAGGACTGGCTAGGTTTGCAACTGTGCGTTATGATCAAGGCTC
CAAGAACATCCGCAACCAGTTCATGCACCTGACGAACTACAGCGTGAACAAGAAGAGTGGAGACTATGTG
AGTTGTGATGACCCAGAAGTGGAGGATTATGGGAACAAGTGGAGCATGAGTGCCATGCTTAGGTACCTGA
AACAAGAAGGCAAGGACACAACTGCATTGATGGCCCATGTGGAAGACCTGATCATTAAGACAATAATCTC
TGCTGAACTAGCTATCGCCACTGCCTGTAAAACCTTTGTTCCACACCGCAGCAGTTGTTTTGAACTGTAT
GGCTTTGATGTGCTCATAGATAATACTCTGAAGCCATGGTTGTTGGAAGTGAATCTCTCTCCTTCTTTGG
CCTGTGATGCTCCTCTGGATCTAAAGATTAAAGCCAGTATGATCTCAGACATGTTCACTGTTGTAGGATT
TGTGTGCCAAGATCCTGCCCAGCGGACATCCAACCGGTCAATTTATCCCAGTTTTGAGTCTTCCAGGCGG
AACCCTTTTCAGAAACCTCAGCGCACCCGTCCACTCTCTGCCAGTGATGCAGAAATGAAAAACCTTGTGG
CCTCAGCCCGGGAGAAGGTACCGGGGAAGTTAGGCGGTTCTGTGCTTGGTCTGTCAATGGAGGAGATCAA
AGTTCTCCGGAGGGTAAAGGAGGAGAATGATCGGAGAGGAGGGTTTATTCGCATATTTCCTACATCGGAG
ACATGGGAAATATATGGGTCCTACCTTGAACACAAAACCTCCATGAACTACATGCTGGCAACACGCCTAT
TCCAGGACAGAGGAAACCCCAGAAGGAGCTTGCTGACAGGAAGAGCACGAGTGAGCACGGAAGGAGCACC
AGAGCTAAAGGTGGAGAGCATGAACTCCAAGGCCAAGCTGCATGCCGCTCTCTATGAGAGGAAGCTACTG
TCTCTGGAGGTGCGAAAACGTAGACGACGGAGTGGCAGATTGAGGGCAATGAGGCCAAAATACCCAGTGA
TTGCCCAACCAGCTGAAATGAATATTAAAACCGAGACAGAGAGTGAAGAGGAGGAAGAAGTTGGATTAGA
CAATGACGATGAAGAGCAGGAAGCATCCCAGGAGGAGTCTGCAGGGTCTCTTGGAGAAAATCAAGCCAAG
TACACACCTTCATTGACTGTTATAGTAGAAAATTCGCCCAGAGACAATGCAATGAAAGTTGCCGAGTGGA
CTAATAAAGGTGAACCGTGCTGCAAAATCGAGGCTCAGGAGCCAGAGTCTAAATTCAACCTGATGCAGAT
TCTCCAGGACAATGGCAATCTAAGCAAAGTACAGGCCCGGTTAGCATTCTCTGCCTATCTTCAGCATGTG
CAAATCCGTCTGACAAAAGACAGTGGTGGTCAGACACTCAGTCCCAGCTGGGCTGCCAAAGAGGATGAAC
AGATGGAACTGGTGGTTCGTTTTCTCAAGCGAGCGTCAAGTAACCTCCAGCACTCGCTGAGGATGGTATT
GCCTAGTCGGCGGTTGGCACTTCTGGAGCGCAGGAGAATCCTTGCCCACCAGCTAGGAGACTTTATCGGT
GTGTACAACAAGGAAACAGAACAAATGGCTGAAAAGAAATCAAAGAAGAAACTTGAAGAAGAGGAAGAAG
ATGGGGTGAACGCAGAAAGCTTTCAGGAGTTTATTCGACAAGCAAGTGAGGCTGAACTGGAGGAGGTGTT
GACTTTTTATACCCAAAAAAACAAGTCTGCCAGTGTCTTCCTGGGGACTCACTCGAAAAGCTCTAAGAAC
AGCAGTAGTTACTCTGATAGTGGGGCAAAAGGTGATCACCCTGAGACCATACAAGAAGTGAAAATAAAGC
AACCCAAACAGCAACAGGCAACAGAAATCCACGCCGATAAATTATCTCGATTTACCACTTCATCAGGAAA
AGAGGCGAAACTAGTGTATACCAATTGCTCTTCTTTCTGCAGTCCTGCTGCTGTTCTTCTGCAGAGACTC
CCCAGCTCCCATCTGTCGTCCGTGATCACAACCTCTGCCCTCTCGGCAGGCCCTGGCCACCATGCTTCTC
TATCTCAAATCCCTCCAGCTGTCCCCAGCCTGCCTCACCAGCCAGCACTGCTACTGAGCCCCGTTCCTGA
CAATGCCCCTCCCTCCATACACTCTGGAACCCAGAATGTAAGCCCTGCGGGGCTGCCACGCTGTCGATCC
GGCAGCTACACCATTGGCCCCTTTTCCTCTTTCCAAAGTGCCGCACATATCTATAGCCAGAAACTGTCTC
GTCCCTCCTCAGCAAAGGCAGCAGGGTCATGTCATCCACACAAGCATCATTCAGGAATTGCCAAAACACA
AAAAGAGGGTGAAGATGTTTCATTAAACAGGAGGTACAACCAAAGTCTGGTTACGGCTGAACTCCAGCGG
CTCGCGGAGAAGCAGGCAGCCAGGCAGTATTCTCCAGCCAGTCACATCAGTCTCCTCACTCAGCAGGTGA
CAAACCTGAATTTGGCCAGCAGTGTCATAAACAGAAGCAGTGCATCCACCCCCCCTACCCTTCGGCCTGT
CATCAGTCCTAGTGGCCCAACGTGGTCTATACAGCCAGACCTCCACGCTTCTGAGACCCACTCCAGCCCC
CCTGGAAGCAGGAGCCTCCAGACAGGTGGCTTTGCCTGGGAGGGCGAGGTAGAGAACAACGCATACAGCA
AGACTACAGGGGTGGTCCCCCAGCACAAGTACCACCCCACAGCAGGCAGCTACCAGCTCCACTTTGCTCT
CCAGCAACTCGAGCAACAAAAACTTCAGTCCCGGCAACTTCTGGACCAGAGTCGAGCCCGGCACCAGGCA
ATCTTTGGCAGCCAGACACTACCTAACTCCAGTTTATGGACAATGAATAATGGTCCAGGCTGCAGAATTT
CAAGTGCCACAACTGGTGGCCAGAAGCCAAACACCCTGCCACAAAAAGTAGTGGCACCTCCAAATTCATC
CACCTTGGTCTCCAAGCCTGCATCCAATCACAAGCAAGTGCTCAGAAAGCCGGCATCCCAGAGGGCTTCC
AAAGGGTCCTCTGCAGAAGGGCAGCTGAACGGTCTCCAGAGCAGCCTTAACCCTGCAGCCTTCATGCCCA
TCACCAACTCCACAGACCCTGCTCACACTAACAGATGA

Translation (1295 aa):
MPVVMARDLEETASSSEDEDLANQEDHPCIMWTGGCRRIPVLVFHAEAILTKDNNIRVIGERYHLSYKIV
RTDSRLVRSILTAHGFHEVHPSSTDYNLMWTGSHLKPFLLRTLSEAQKVNHFPRSYELTRKDRLYKNIIR
MQHTHGFKAFHILPQTFLLPAEYAEFCNSYSKDRGPWIVKPVASSRGRGVYLINNPNQISLEENILVSRY
INNPLLIDDFKFDVRLYVLVTSYDPLVIYLYEEGLARFATVRYDQGSKNIRNQFMHLTNYSVNKKSGDYV
SCDDPEVEDYGNKWSMSAMLRYLKQEGKDTTALMAHVEDLIIKTIISAELAIATACKTFVPHRSSCFELY
GFDVLIDNTLKPWLLEVNLSPSLACDAPLDLKIKASMISDMFTVVGFVCQDPAQRTSNRSIYPSFESSRR
NPFQKPQRTRPLSASDAEMKNLVASAREKVPGKLGGSVLGLSMEEIKVLRRVKEENDRRGGFIRIFPTSE
TWEIYGSYLEHKTSMNYMLATRLFQDRGNPRRSLLTGRARVSTEGAPELKVESMNSKAKLHAALYERKLL
SLEVRKRRRRSGRLRAMRPKYPVIAQPAEMNIKTETESEEEEEVGLDNDDEEQEASQEESAGSLGENQAK
YTPSLTVIVENSPRDNAMKVAEWTNKGEPCCKIEAQEPESKFNLMQILQDNGNLSKVQARLAFSAYLQHV
QIRLTKDSGGQTLSPSWAAKEDEQMELVVRFLKRASSNLQHSLRMVLPSRRLALLERRRILAHQLGDFIG
VYNKETEQMAEKKSKKKLEEEEEDGVNAESFQEFIRQASEAELEEVLTFYTQKNKSASVFLGTHSKSSKN
SSSYSDSGAKGDHPETIQEVKIKQPKQQQATEIHADKLSRFTTSSGKEAKLVYTNCSSFCSPAAVLLQRL
PSSHLSSVITTSALSAGPGHHASLSQIPPAVPSLPHQPALLLSPVPDNAPPSIHSGTQNVSPAGLPRCRS
GSYTIGPFSSFQSAAHIYSQKLSRPSSAKAAGSCHPHKHHSGIAKTQKEGEDVSLNRRYNQSLVTAELQR
LAEKQAARQYSPASHISLLTQQVTNLNLASSVINRSSASTPPTLRPVISPSGPTWSIQPDLHASETHSSP
PGSRSLQTGGFAWEGEVENNAYSKTTGVVPQHKYHPTAGSYQLHFALQQLEQQKLQSRQLLDQSRARHQA
IFGSQTLPNSSLWTMNNGPGCRISSATTGGQKPNTLPQKVVAPPNSSTLVSKPASNHKQVLRKPASQRAS
KGSSAEGQLNGLQSSLNPAAFMPITNSTDPAHTNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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