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Report for CCDS83985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83985.1 Public Mus musculus 12 Acot3 23 108 98 CCDS HistoryNCBI Gene:171281Re-query CCDS DB by CCDS ID:83985.1Re-query CCDS DB by GeneID:171281See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120927.7 ENSMUSP00000112678.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120927.7Link to Ensembl Protein Viewer:ENSMUSP00000112678.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120927Re-query CCDS DB by Protein ID:ENSMUSP00000112678
Original member Current member NCBI NM_001346701.1 NP_001333630.1 Accepted alive Link to Nucleotide Sequence:NM_001346701.1Link to Protein Sequence:NP_001333630.1Re-query CCDS DB by Nucleotide ID:NM_001346701Re-query CCDS DB by Protein ID:NP_001333630Link to BLAST:NP_001333630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333630.1 421 Q9QYR7-2 421 100% 0 0

Chromosomal Locations for CCDS 83985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84053485 84053941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84056909 84057111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84058421 84059026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCACCTACTGTGATCCTGGAGCCCGCGGGTGGTTGCCTTTGTGACCAGCCGGTGCACATCGCTGTGC
GCGGCCTGGCCCCGGAGCAGCCCGTCACGCTGCGCTCTGTCCTGCGCGACGAGAAGGGCGCGCTCTTCCG
AGCCCACGCGCGCTACCGCGCGGACTCCCACGGCGAGCTGGACCTGGCGCGCACGCCCGCGCTGGGCGGC
AGCTTCTCGGGGCTCGAGCCCATGGGGCTGCTCTGGGCCATGGAGCCCGATCGGCCTTTCTGGCGCCTGA
TCAAGCGCGACGTGCAGACGCCCTTTGTGGTGGAGCTGGAGGTGCTGGACGGACACGAGCCCGACGGCGG
GCAGCGGCTGGCGCGGGCGGTGCACGAGCGTCACTTCATGGCCCCCGGGGTTCGGCGCGTGCCGGTGCGC
GAGGGCCGGGTGCGCGCCACGCTCTTCCTGCCCCCAGGAACTGGACCCTTTCCTGGAATCATAGACCTTT
TTGGAATTGGAAGTGGCCTTCTGGAGTATCGGGCGAGTCTGCTGGCTGGGAAGGGCTTTGCCGTCATGGC
TCTGGCTTATAACAACTACGAGGACCTCCCTAAGGACATGGACATTATCCACCTGGAGTACTTTGAGGAA
GCTGTGACCTACCTGCTCAGTCACCCTCAGGTAACAGGTTCAGGAGTCGGGGTCCTTGGCATTTCCAAAG
GGGGTGAACTTGGCTTTGCCATGGCCTCCTTCTTGAAAAATATCACAGCCGCTGTCATCATCAATGGCTC
TATATCCAACATCGGCGGAAACTTACAGTACAAGGATGAGACTGTGCCCTCCGTGGGCATAAACACCAAG
CGAGTCAAGAGAACCAAAGATGGCCTCAAAGACATTGTGGATCTTCTAAACAATCCTTTGGAAGGACCTG
ACCAGAAGAGCTTGATTCCCGTGGAAAGGTCTGACACAGCCTTCCTGTTCCTCGTAGGTCAGGACGACCA
CAACTGGAAGAGCGAGTTCTATGCCAGAGAGGCCTCCAAACGCCTGCAGGCGCACGGGAAGGAGAAGCCC
CAGATCATCTGCTACCCAGAGACAGGCCACCATATTGAGCCTCCTTACTTCCCACTGTGTAAGGCTTCCC
TGAACAGCCTGGTGGGTGGTCCTGTCATCTGGGGAGGGGAGCCCAGGGCTCATGCCATGGCCCAGGTGGA
CGCTTGGCAGCAACTCCAGACTTTTTTCCACAATCATTTGGATGGCAAAAAGAAGACAATCCCAGCAAAA
CTGTGA

Translation (421 aa):
MAPTVILEPAGGCLCDQPVHIAVRGLAPEQPVTLRSVLRDEKGALFRAHARYRADSHGELDLARTPALGG
SFSGLEPMGLLWAMEPDRPFWRLIKRDVQTPFVVELEVLDGHEPDGGQRLARAVHERHFMAPGVRRVPVR
EGRVRATLFLPPGTGPFPGIIDLFGIGSGLLEYRASLLAGKGFAVMALAYNNYEDLPKDMDIIHLEYFEE
AVTYLLSHPQVTGSGVGVLGISKGGELGFAMASFLKNITAAVIINGSISNIGGNLQYKDETVPSVGINTK
RVKRTKDGLKDIVDLLNNPLEGPDQKSLIPVERSDTAFLFLVGQDDHNWKSEFYAREASKRLQAHGKEKP
QIICYPETGHHIEPPYFPLCKASLNSLVGGPVIWGGEPRAHAMAQVDAWQQLQTFFHNHLDGKKKTIPAK
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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