NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS83853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83853.1 Public Mus musculus 11 Unc119 23 108 98 CCDS HistoryNCBI Gene:22248Re-query CCDS DB by CCDS ID:83853.1Re-query CCDS DB by GeneID:22248See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108295.7 ENSMUSP00000103930.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108295.7Link to Ensembl Protein Viewer:ENSMUSP00000103930.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108295Re-query CCDS DB by Protein ID:ENSMUSP00000103930
Original member Current member NCBI NM_001313985.1 NP_001300914.1 Accepted alive Link to Nucleotide Sequence:NM_001313985.1Link to Protein Sequence:NP_001300914.1Re-query CCDS DB by Nucleotide ID:NM_001313985Re-query CCDS DB by Protein ID:NP_001300914Link to BLAST:NP_001300914.1

Chromosomal Locations for CCDS 83853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78343567 78343786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78347218 78347331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78347797 78347899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78348087 78348259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78348465 78348643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGAAGGTGAAGAAAGGCGGCGGCGGGACCGGGTCGGGGGCGGAGCCCGTTCCAGGGGCCTCGAACCGGA
GCGCGGAGCCCACGCGGGAGCCTGGGGCGGAAGCTGAGTCCGGGTCCGAGTCGGAGCCGGAGCCAGGCCC
GGGGCCCAGGCTGGGGCCGCTGCAGGGCAAGCAGCCCATCGGGCCGGAGGATGTGCTGGGGCTGCAGCGG
ATCACGGGTGACTACCTGTGCTCCCCTGAGGAAAATATCTACAAGATTGACTTCGTCAGGTTCAAGATCC
GTGACATGGACTCAGGGACTGTCCTTTTTGAAATCAAGAAGCCCCCTGTTTCGGAACGGTTGCCCATCAA
CCGGCGGGACCTGGACCCCAATGCAGGGCGCTTTGTTCGCTACCAGTTCACACCTGCCTTCCTCCGCCTA
AGGCAGGTGGGAGCCACGGTGGAGTTCACAGTGGGAGACAAGCCGGTCAACAACTTCCGCATGATCGAGA
GGCACTACTTTCGAAACCAGCTCCTCAAAAGCTTCGACTTCCACTTTGGCTTCTGCATCCCCAGCAGCAA
GAACACCTGTGAGCACATCTATGACTTCCCTCCTCTCTCCGAGGAGCTAATTCTGAAGTCCCTACAGGGT
CTGGCTCAGGGTCCTGACCTTTGCCCTGGATGGGCCTCTCTTGCAGTCAGTGAGATGATTCGTCACCCGT
ATGAGACCCAGTCTGACAGCTTCTACTTCGTGGATGACCGGCTGGTGATGCATAACAAAGCAGACTATTC
CTACAGTGGGACACCCTGA

Translation (262 aa):
MKVKKGGGGTGSGAEPVPGASNRSAEPTREPGAEAESGSESEPEPGPGPRLGPLQGKQPIGPEDVLGLQR
ITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRL
RQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELILKSLQG
LAQGPDLCPGWASLAVSEMIRHPYETQSDSFYFVDDRLVMHNKADYSYSGTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH