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Report for CCDS83727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83727.1 Public Mus musculus 10 Midn 23 108 98 CCDS HistoryNCBI Gene:59090Re-query CCDS DB by CCDS ID:83727.1Re-query CCDS DB by GeneID:59090See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099492.9 ENSMUSP00000097091.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099492.9Link to Ensembl Protein Viewer:ENSMUSP00000097091.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099492Re-query CCDS DB by Protein ID:ENSMUSP00000097091
Original member Current member NCBI NM_001347117.1 NP_001334046.1 Accepted alive Link to Nucleotide Sequence:NM_001347117.1Link to Protein Sequence:NP_001334046.1Re-query CCDS DB by Nucleotide ID:NM_001347117Re-query CCDS DB by Protein ID:NP_001334046Link to BLAST:NP_001334046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334046.1 465 Q3TPJ7-1 465 100% 0 0

Chromosomal Locations for CCDS 83727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80150078 80150313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80151378 80151465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80151661 80151723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80153816 80154133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80154331 80154472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80155134 80155406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80156365 80156642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGAGCCGCAGCCCGGCGGTGCCCGGAGCTGCCGGCGCGGGGCCCCCGGCGGCGCCTGCGAGCTGAACA
CGGCCACGGAGTCGGCCGCACCCATGAGCCTGGCGATCCACAGCACTACGGGGACCCGCTACGACCTGTC
GGTGCCCCACGACGAGACCGTGGAAGGGCTGCGCAAAAGGTTGTCCCAACGCCTCAAAGTACCCAAGGAA
CGCCTGGCGCTGCTTCACAAAGACACCCGGCTCAGTTCGGGGAAGCTGCAGGAATTCGGCGTGGGGGATG
GGAGCAAGTTGACGCTCGTGCCCACGGTGGAAGCTGGCCTCATGTCCCAGGCCTCGAGGCCGGAACAGTC
CGTTATGCAAGCCTTGGAAAGTTTGACCGAGACCCAGGTCAGTGACTTTCTGTCAGGCCGCTCGCCTTTG
ACCCTGGCCCTGCGAGTCGGGGATCACATGATGTTTGTGCAGTTGCAACTGGCAGCCCAGCATGCCCCAC
TCCAGCACCGCCATGTGCTTGCTGCTGCCGCAGCAGCAGCCGCCGCCGCCCGGGGAGACTCCAGTGTAGC
CACCCCAGTGTCTTCACCCTGTAGGCCGGTGTCCAGTGCCGCCCGTGTACCCCCAGTATCCAGCAGCCCT
TCCTCACCTGTATCCCCCTCACCTGTCACTGCTGGCTCCTTCCGATCCCACGCAGCCTCCACAACCTGTC
CTGAGCAGATGGACTGTTCTCCACCCGCCAGCAGCAGCTCCACATCCACCCCAGGCAGCAGCCCCACCCC
TCGATCCCGCAAACCTGGTGCGGTCATTGAGAGCTTCGTGAACCATGCTCCAGGGGTCTTCTCAGGGACC
TTCTCTGGCACACTACACCCCAACTGCCAGGACAGCAGTGGGCGGCCTCGGCGTGACATCGGCACCATTC
TGCAGATACTCAATGACCTCCTAAGTGCCACGAGGCACTACCAGGGCATGCCACCCTCACTGACCCAGCT
CCGCTGCCATGCTCAGTGCTCACCTGCCTCACCAGCCCCTGACCTCACCCCCAAAACTACCTCCTGTGAA
AAGCTGGCAGCCACCTCCTCCACATCCCTGCTCCAGGGCCAGAGCCAGATTCGAATGTGCAAGCCCCCTG
GAGACCGTCTTCGACAGACAGAGAACCGTGCCACACGTTGCAAAGTGGAACGCCTCCAGCTCCTGTTGCA
GCAGAAGCGCCTGCGCAGGAAGGCACGGCGGGACGCCCGGGGGCCTTACCACTGGACCCCCAGCCGCAAA
GCTGGCCGTAGCGACAGCAGCAGCAGTGGGGGTGGAGGTGGCCCCAGCGAGGCCACAGGCTTGGGCCTCG
ACTTCGAGGACTCCGTTTGGAAGCCTGAAGTCAACCCGGACATCCAGTCCGAGTTTGTGGTGGCTTAA

Translation (465 aa):
MEPQPGGARSCRRGAPGGACELNTATESAAPMSLAIHSTTGTRYDLSVPHDETVEGLRKRLSQRLKVPKE
RLALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQVSDFLSGRSPL
TLALRVGDHMMFVQLQLAAQHAPLQHRHVLAAAAAAAAAARGDSSVATPVSSPCRPVSSAARVPPVSSSP
SSPVSPSPVTAGSFRSHAASTTCPEQMDCSPPASSSSTSTPGSSPTPRSRKPGAVIESFVNHAPGVFSGT
FSGTLHPNCQDSSGRPRRDIGTILQILNDLLSATRHYQGMPPSLTQLRCHAQCSPASPAPDLTPKTTSCE
KLAATSSTSLLQGQSQIRMCKPPGDRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWTPSRK
AGRSDSSSSGGGGGPSEATGLGLDFEDSVWKPEVNPDIQSEFVVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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