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Report for CCDS82671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82671.1 Public Homo sapiens 21 VPS26C 24 110 108 CCDS HistoryNCBI Gene:10311Re-query CCDS DB by CCDS ID:82671.1Re-query CCDS DB by GeneID:10311See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82671.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399001.5 ENSP00000381967.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399001.5Link to Ensembl Protein Viewer:ENSP00000381967.1Re-query CCDS DB by Nucleotide ID:ENST00000399001Re-query CCDS DB by Protein ID:ENSP00000381967
Original member Current member NCBI NM_001331018.1 NP_001317947.1 Accepted alive Link to Nucleotide Sequence:NM_001331018.1Link to Protein Sequence:NP_001317947.1Re-query CCDS DB by Nucleotide ID:NM_001331018Re-query CCDS DB by Protein ID:NP_001317947Link to BLAST:NP_001317947.1

Chromosomal Locations for CCDS 82671.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 37225544 37225626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 37227654 37227806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 37228223 37228373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 37232377 37232451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 37267238 37267294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGGGACCGCCCTGGACATCAAGATTAAAAGAGCGAATAAAGTTTATCACGCCGGGCCTCAGAAGGGGA
AGTTTACTCCCAGTCCCGTGGACTTCACGATTACACCTGAAACCTTACAGAACGTCAAAGAGAGAGCTTT
GCTTCCCAAATTTCTCCTTCGAGGACATCTCAACTCAACAAACTGTGTCATCACGCAGCCACTAACGGGA
GAGCTGGTGGTGGAGAGCTCGGAAGCCGCCATCAGAAGCGTGGAGCTGCAGCTGGTGCGCGTGGAGACGT
GCGGGTGTGCAGAAGGCTATGCCCGCGACGCCACGGAGATTCAGAACATTCAGATCGCCGACGGGGATGT
GTGCAGGGGCCTCTCTGTCCCCATCTACATGGTCTTCCCTAGGCTGTTCACCTGCCCTACACTGGAGACC
ACCAACTTCAAAGTGGAATTTGAGGTTAACATCGTGGTGCTGCTTCACCCTGACCACCTCATCACGGAGA
ACTTCCCGCTGAAGCTCTGCAGGATATAG

Translation (172 aa):
MGTALDIKIKRANKVYHAGPQKGKFTPSPVDFTITPETLQNVKERALLPKFLLRGHLNSTNCVITQPLTG
ELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLET
TNFKVEFEVNIVVLLHPDHLITENFPLKLCRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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