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Report for CCDS81579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81579.1 Public Homo sapiens 11 TRPT1 24 110 108 CCDS HistoryNCBI Gene:83707Re-query CCDS DB by CCDS ID:81579.1Re-query CCDS DB by GeneID:83707See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81579.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000546089.5 ENSP00000437741.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546089.5Link to Ensembl Protein Viewer:ENSP00000437741.1Re-query CCDS DB by Nucleotide ID:ENST00000546089Re-query CCDS DB by Protein ID:ENSP00000437741
Original member Current member NCBI NM_001330298.2 NP_001317227.1 Accepted alive Link to Nucleotide Sequence:NM_001330298.2Link to Protein Sequence:NP_001317227.1Re-query CCDS DB by Nucleotide ID:NM_001330298Re-query CCDS DB by Protein ID:NP_001317227Link to BLAST:NP_001317227.1

Chromosomal Locations for CCDS 81579.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64223876 64223967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224285 64224341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224543 64224717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64224801 64224970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64225499 64225508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGGAGCTGATGGCTTCGTGCCCCTGGGCACCCTCCTGCAGTTGCCCCAGTTCCGCGGCTTCTCTGCTG
AAGATGTGCAGCGCGTGGTGGACACCAATAGGAAGCAGCGGTTCGCCCTGCAGCTGGGGGATCCCAGCAC
TGGCCTTCTCATCCGGGCCAACCAGGGCCATTCCCTGCAGGTACCTAAGTTGGAGCTGATGCCCCTGGAG
ACACCGCAGGCCCTGCCCCCGATGCTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATCCTACTCA
AAGGCCTGTCCTGCCAGGGAAGGACGCACATTCACCTGGCCCCAGGACTGCCTGGAGACCCCGGTATCAT
CAGTGGCATGCGGTCCCATTGTGAAATAGCTGTGTTCATCGATGGACCCCTGGCTCTGGCAGGAAAGCCC
CTTTCCTTGGCTGGTGATGAAGAGACAGAGTGTCAGAGTAGCCCCAAGCACAGCTCCAGAGAAAGGAGGA
GGATCCAACAATAA

Translation (167 aa):
MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQVPKLELMPLE
TPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIHLAPGLPGDPGIISGMRSHCEIAVFIDGPLALAGKP
LSLAGDEETECQSSPKHSSRERRRIQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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