NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81429.1 Public Homo sapiens 1 SNAP47 24 110 108 CCDS HistoryNCBI Gene:116841Re-query CCDS DB by CCDS ID:81429.1Re-query CCDS DB by GeneID:116841See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81429.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366759.9 ENSP00000355721.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366759.9Link to Ensembl Protein Viewer:ENSP00000355721.5Re-query CCDS DB by Nucleotide ID:ENST00000366759Re-query CCDS DB by Protein ID:ENSP00000355721
Original member Current member EBI ENST00000617596.5 ENSP00000483253.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617596.5Link to Ensembl Protein Viewer:ENSP00000483253.1Re-query CCDS DB by Nucleotide ID:ENST00000617596Re-query CCDS DB by Protein ID:ENSP00000483253
Original member Current member EBI ENST00000681149.1 ENSP00000505139.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681149.1Link to Ensembl Protein Viewer:ENSP00000505139.1Re-query CCDS DB by Nucleotide ID:ENST00000681149Re-query CCDS DB by Protein ID:ENSP00000505139
Original member Current member EBI ENST00000681447.1 ENSP00000505540.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681447.1Link to Ensembl Protein Viewer:ENSP00000505540.1Re-query CCDS DB by Nucleotide ID:ENST00000681447Re-query CCDS DB by Protein ID:ENSP00000505540
Original member Current member EBI ENST00000680854.1 ENSP00000505610.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680854.1Link to Ensembl Protein Viewer:ENSP00000505610.1Re-query CCDS DB by Nucleotide ID:ENST00000680854Re-query CCDS DB by Protein ID:ENSP00000505610
Original member Current member EBI ENST00000680992.1 ENSP00000505843.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680992.1Link to Ensembl Protein Viewer:ENSP00000505843.1Re-query CCDS DB by Nucleotide ID:ENST00000680992Re-query CCDS DB by Protein ID:ENSP00000505843
Original member Current member EBI ENST00000679575.1 ENSP00000505941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679575.1Link to Ensembl Protein Viewer:ENSP00000505941.1Re-query CCDS DB by Nucleotide ID:ENST00000679575Re-query CCDS DB by Protein ID:ENSP00000505941
Original member Current member EBI ENST00000680202.1 ENSP00000506178.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680202.1Link to Ensembl Protein Viewer:ENSP00000506178.1Re-query CCDS DB by Nucleotide ID:ENST00000680202Re-query CCDS DB by Protein ID:ENSP00000506178
Original member Current member EBI ENST00000681827.1 ENSP00000506670.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681827.1Link to Ensembl Protein Viewer:ENSP00000506670.1Re-query CCDS DB by Nucleotide ID:ENST00000681827Re-query CCDS DB by Protein ID:ENSP00000506670
Original member Current member NCBI NM_001323930.2 NP_001310859.1 Accepted alive Link to Nucleotide Sequence:NM_001323930.2Link to Protein Sequence:NP_001310859.1Re-query CCDS DB by Nucleotide ID:NM_001323930Re-query CCDS DB by Protein ID:NP_001310859Link to BLAST:NP_001310859.1
Original member Current member NCBI NM_001323931.2 NP_001310860.1 Accepted alive Link to Nucleotide Sequence:NM_001323931.2Link to Protein Sequence:NP_001310860.1Re-query CCDS DB by Nucleotide ID:NM_001323931Re-query CCDS DB by Protein ID:NP_001310860Link to BLAST:NP_001310860.1
Original member Current member NCBI NM_001323932.2 NP_001310861.1 Accepted alive Link to Nucleotide Sequence:NM_001323932.2Link to Protein Sequence:NP_001310861.1Re-query CCDS DB by Nucleotide ID:NM_001323932Re-query CCDS DB by Protein ID:NP_001310861Link to BLAST:NP_001310861.1
Original member Current member NCBI NM_001323933.2 NP_001310862.1 Accepted alive Link to Nucleotide Sequence:NM_001323933.2Link to Protein Sequence:NP_001310862.1Re-query CCDS DB by Nucleotide ID:NM_001323933Re-query CCDS DB by Protein ID:NP_001310862Link to BLAST:NP_001310862.1
Original member Current member NCBI NM_001323934.2 NP_001310863.1 Accepted alive Link to Nucleotide Sequence:NM_001323934.2Link to Protein Sequence:NP_001310863.1Re-query CCDS DB by Nucleotide ID:NM_001323934Re-query CCDS DB by Protein ID:NP_001310863Link to BLAST:NP_001310863.1
Original member Current member NCBI NM_053052.4 NP_444280.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053052.4Link to Protein Sequence:NP_444280.3Re-query CCDS DB by Nucleotide ID:NM_053052Re-query CCDS DB by Protein ID:NP_444280Link to BLAST:NP_444280.3

Chromosomal Locations for CCDS 81429.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 227747737 227748233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227758995 227759485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227766959 227767083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 227780527 227780673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAGCAGGGATGTCTGCATCCACACCTGGCCGTGCACCTACTACCTGGAGCCCAAGAGGCGATGGGTTA
CTGGACAGCTGTCCTTAACATCGCTGTCGCTCAGGTTCATGACTGACAGCACTGGAGAGATTCTGGTCAG
CTTCCCCCTCTCCAGCATAGTTGAGATCAAGAAGGAGGCTTCACATTTTATCTTCAGCTCCATCACCATC
CTGGAGAAGGGCCATGCCAAGCACTGGTTCAGCTCCCTGCGGCCAAGTCGAAATGTGGTCTTCAGCATCA
TCGAGCATTTCTGGAGGGAGCTGCTGCTGTCTCAGCCTGGAGCCGTGGCAGACGCATCTGTCCCAAGGAC
CCGGGGCGAGGAGCTGACGGGACTCATGGCTGGATCCCAGAAACGCCTGGAGGACACGGCGAGGGTCCTG
CACCACCAGGGCCAGCAGCTGGACAGCGTCATGAGAGGCCTGGACAAGATGGAGTCAGACCTGGAGGTGG
CGGACAGATTGCTGACAGAACTGGAATCTCCTGCTTGGTGGCCCTTTAGCTCCAAGCTTTGGAAGACACC
ACCGGAAACAAAGCCCAGGGAAGATGTCTCCATGACCAGTTGTGAACCCTTTGGGAAAGAAGGGATACTG
ATAAAAATTCCTGCTGTTATTTCCCACAGAACAGAGTCTCACGTTAAACCAGGGAGGCTCACCGTCCTTG
TGTCTGGGTTGGAAATACATGACTCCAGTTCTTTGCTCATGCACAGGTTTGAAAGAGAAGACGTGGACGA
CATCAAGGTCCACTCACCTTACGAAATTAGCATCCGCCAGCGGTTTATTGGAAAGCCAGACATGGCCTAT
CGTTTGATATCTGCCAAGATGCCAGAGGTTATCCCCATTTTAGAAGTGCAGTTCAGCAAGAAGATGGAGC
TGTTAGAAGATGCATTGGTGCTCAGAAGCGCAAGAACCTCTTCCCCCGCAGAGAAGAGCTGCTCAGTCTG
GCATGCAGCATCTGGGCTGATGGGCCGTACCCTGCACCGTGAGCCACCCGCAGGAGACCAGGAGGGCACA
GCACTGCACCTGCAGACAAGCCTGCCAGCCCTTTCTGAGGCAGATACCCAGGAACTAACCCAGATCCTGA
GGAGGATGAAGGGGCTGGCCCTGGAGGCCGAGAGTGAGCTGGAGAGACAAGACGAAGCCCTGGATGGCGT
TGCAGCAGCTGTGGACAGGGCAACCTTGACCATCGACAAGCACAACAGGCGGATGAAGAGGCTGACCTAG

Translation (419 aa):
MSRDVCIHTWPCTYYLEPKRRWVTGQLSLTSLSLRFMTDSTGEILVSFPLSSIVEIKKEASHFIFSSITI
LEKGHAKHWFSSLRPSRNVVFSIIEHFWRELLLSQPGAVADASVPRTRGEELTGLMAGSQKRLEDTARVL
HHQGQQLDSVMRGLDKMESDLEVADRLLTELESPAWWPFSSKLWKTPPETKPREDVSMTSCEPFGKEGIL
IKIPAVISHRTESHVKPGRLTVLVSGLEIHDSSSLLMHRFEREDVDDIKVHSPYEISIRQRFIGKPDMAY
RLISAKMPEVIPILEVQFSKKMELLEDALVLRSARTSSPAEKSCSVWHAASGLMGRTLHREPPAGDQEGT
ALHLQTSLPALSEADTQELTQILRRMKGLALEAESELERQDEALDGVAAAVDRATLTIDKHNRRMKRLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH