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Report for CCDS8071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8071.1 Public Homo sapiens 11 PRDX5 24 110 108 CCDS HistoryNCBI Gene:25824Re-query CCDS DB by CCDS ID:8071.1Re-query CCDS DB by GeneID:25824See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8071.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347941.4 ENSP00000335363.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347941.4Link to Ensembl Protein Viewer:ENSP00000335363.6Re-query CCDS DB by Nucleotide ID:ENST00000347941Re-query CCDS DB by Protein ID:ENSP00000335363
Original member Current member NCBI NM_181652.3 NP_857635.2 Accepted alive Link to Nucleotide Sequence:NM_181652.3Link to Protein Sequence:NP_857635.2Re-query CCDS DB by Nucleotide ID:NM_181652Re-query CCDS DB by Protein ID:NP_857635Link to BLAST:NP_857635.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_857635.2 125 P30044-4 125 100% 0 0

Chromosomal Locations for CCDS 8071.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64318216 64318386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64320865 64320903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64321007 64321068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64321586 64321691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGGGACTAGCTGGCGTGTGCGCCCTGAGACGCTCAGCGGGCTATATACTCGTCGGTGGGGCCGGCGGTC
AGTCTGCGGCAGCGGCAGCAAGACGGTACAGTGAAGGAGAGTGGGCGTCTGGCGGGGTCCGCAGTTTCAG
CAGAGCCGCTGCAGCCATGGCCCCAATCAAGGTTCGGCTCCTGGCTGATCCCACTGGGGCCTTTGGGAAG
GAGACAGACTTATTACTAGATGATTCGCTGGTGTCCATCTTTGGGAATCGACGTCTCAAGAGGTTCTCCA
TGGTGGTACAGGATGGCATAGTGAAGGCCCTGAATGTGGAACCAGATGGCACAGGCCTCACCTGCAGCCT
GGCACCCAATATCATCTCACAGCTCTGA

Translation (125 aa):
MGLAGVCALRRSAGYILVGGAGGQSAAAAARRYSEGEWASGGVRSFSRAAAAMAPIKVRLLADPTGAFGK
ETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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