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Report for CCDS80654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80654.1 Public Mus musculus 7 Lair1 23 108 98 CCDS HistoryNCBI Gene:52855Re-query CCDS DB by CCDS ID:80654.1Re-query CCDS DB by GeneID:52855See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80654.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108600.8 ENSMUSP00000104241.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108600.8Link to Ensembl Protein Viewer:ENSMUSP00000104241.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108600Re-query CCDS DB by Protein ID:ENSMUSP00000104241
Original member Current member NCBI NM_001302675.1 NP_001289604.1 Accepted alive Link to Nucleotide Sequence:NM_001302675.1Link to Protein Sequence:NP_001289604.1Re-query CCDS DB by Nucleotide ID:NM_001302675Re-query CCDS DB by Protein ID:NP_001289604Link to BLAST:NP_001289604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289604.1 224 Q8BG84-6 224 100% 0 0

Chromosomal Locations for CCDS 80654.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4009691 4009834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4010251 4010300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4010466 4010503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4010590 4010632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4028707 4029036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4055918 4055953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4063069 4063102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGTCACTTCATCCAGTTATCCTGCTGGTGCTTGTGCTGTGCCTGGGATGGAAAATTAACACACAGGAGG
GTTCTCTGCCTGATATTACCATCTTCCCTAATTCAAGTCTTATGATCTCCCAAGGGACTTTTGTAACTGT
TGTGTGCTCATACTCTGATAAACACGACTTGTATAACATGGTCCGCCTGGAGAAGGACGGCAGCACCTTT
ATGGAAAAGAGCACTGAGCCTTATAAAACAGAGGATGAATTTGAGATTGGGCCAGTGAATGAAACCATTA
CTGGACATTATAGCTGTATCTATTCGAAGGGGATTACCTGGTCCGAACGTAGTAAGACGCTGGAGCTAAA
GGTGATCAAAGAAAATGTCATCCAGACTCCTGCCCCAGGTCCAACCTCAGGACTCCCAAACAACAAAAGA
CAGCAGCAGAGGCCAGAAGAGAGGCTAAATCTAGCTACTAATGGCCTGGAGATGACTCCAGACATAGTTG
CAGATGACAGGCTTCCTGAGGACAGATGGACAGAAACCTGGACCCCAGTTGCAGGAGACCTTCAAGAGGT
GACGTATATCCAGCTGGACCATCACTCCCTCACACAGAGGGCAGTCGGAGCTGTGACCTCACAGAGCACA
GATATGGCTGAGTCCAGCACATATGCAGCCATCATCAGACACTGA

Translation (224 aa):
MSLHPVILLVLVLCLGWKINTQEGSLPDITIFPNSSLMISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTF
MEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKVIKENVIQTPAPGPTSGLPNNKR
QQQRPEERLNLATNGLEMTPDIVADDRLPEDRWTETWTPVAGDLQEVTYIQLDHHSLTQRAVGAVTSQST
DMAESSTYAAIIRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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