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Report for CCDS80524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80524.1 Public Mus musculus 6 Luc7l2 23 108 98 CCDS HistoryNCBI Gene:192196Re-query CCDS DB by CCDS ID:80524.1Re-query CCDS DB by GeneID:192196See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161227.7 ENSMUSP00000125111.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161227.7Link to Ensembl Protein Viewer:ENSMUSP00000125111.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161227Re-query CCDS DB by Protein ID:ENSMUSP00000125111
Original member Current member NCBI NM_001311099.2 NP_001298028.1 Accepted alive Link to Nucleotide Sequence:NM_001311099.2Link to Protein Sequence:NP_001298028.1Re-query CCDS DB by Nucleotide ID:NM_001311099Re-query CCDS DB by Protein ID:NP_001298028Link to BLAST:NP_001298028.1

Chromosomal Locations for CCDS 80524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38585044 38585139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38589176 38589286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38591288 38591431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38592619 38592795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38593378 38593469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38598785 38598814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38603277 38603468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38608153 38608330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGATCTTGGAGAATGCTTGAAAGTCCATGACCTGGCTTTAAGAGCAGATTATGAAATTGCGTCCAAAG
AACAAGACTTTTTCTTTGAACTTGATGCCATGGATCATCTGCAGTCATTCATTGCAGATTGTGATAGAAG
AACAGAAGTATCTAAGAAAAGACTAGCAGAAACTCAAGAAGAGATAAGTGCTGAAGTGGCTGCAAAGGCA
GAGCGTGTTCATGAGTTAAATGAGGAAATAGGCAAGTTGTTGGCCAAAGTGGAACAACTAGGAGCTGAAG
GAAATGTGGAAGAATCTCAGAAAGTCATGGATGAAGTCGAGAAAGCACGGGCAAAGAAAAGAGAAGCAGA
GGAAGTTTATCGGAACTCTATGCCAGCTTCCAGCTTCCAGCAGCAGAAACTTCGTGTCTGCGAGGTCTGC
TCTGCGTATTTAGGTCTTCATGACAATGACAGGCGACTGGCTGATCATTTTGGGGGTAAATTGCACCTGG
GATTTATTGAAATAAGAGAGAAGCTGGAAGAATTAAAGAGAGTTGTAGCTGAGAAGCAGGAGAAGAGAAA
CCAGGAACGTCTGAAACGAAGAGAAGAGAGGGAGAGAGAAGAACGGGAGAAACTGAGGAGGTCCCGATCA
CATAGCAAGAATCCCAAAAGATCTAGATCCAGAGAGCATCGCAGACACCGATCTCGCTCCATGTCACGAG
AACGCAAGAGGAGGACTCGATCCAAGTCTCGTGAGAAACGCCATCGCCACAGGTCCAGGTCCAGTAGCCG
AAGCCGCAGCCGTAGCCACCAGAGAAGTCGGCACAGTTCAAGAGATAGGAGCAGAGAGCGATCCAAGAGG
AGATCCTCAAAAGAAAGATTCAGAGATCAAGACTTAGCATCACGTGACAGAGACAGGAGTTCAAGAGACA
GATCACCTCGTGACCGAGATCGAAAAGATAAGAAGCGGTCCTATGAGAGTGCTAATGGCAGATCAGAAGA
CAGGAGGAGCTCTGAAGAGCGTGAAGCAGGGGAGATCTAA

Translation (339 aa):
MDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKRLAETQEEISAEVAAKA
ERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVC
SAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRS
HSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKR
RSSKERFRDQDLASRDRDRSSRDRSPRDRDRKDKKRSYESANGRSEDRRSSEEREAGEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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