NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80495.1 Public Mus musculus 6 Grm8 23 108 98 CCDS HistoryNCBI Gene:14823Re-query CCDS DB by CCDS ID:80495.1Re-query CCDS DB by GeneID:14823See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090512.9 ENSMUSP00000087998.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090512.9Link to Ensembl Protein Viewer:ENSMUSP00000087998.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090512Re-query CCDS DB by Protein ID:ENSMUSP00000087998
Original member NCBI NM_001311072.1 NP_001298001.1 Updated not alive Link to Nucleotide Sequence:NM_001311072.1Link to Protein Sequence:NP_001298001.1Re-query CCDS DB by Nucleotide ID:NM_001311072Re-query CCDS DB by Protein ID:NP_001298001
Current member NCBI NM_001311072.2 NP_001298001.1 Accepted alive Link to Nucleotide Sequence:NM_001311072.2Link to Protein Sequence:NP_001298001.1Re-query CCDS DB by Nucleotide ID:NM_001311072Re-query CCDS DB by Protein ID:NP_001298001Link to BLAST:NP_001298001.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298001.1 908 P47743 908 100% 0 0

Chromosomal Locations for CCDS 80495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 27275645 27275694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27285735 27285981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27363085 27364020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27429400 27429536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27618485 27618685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27760174 27760311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27761206 27761360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27762362 27762497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 27981183 27981399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28125616 28126125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGGTTTGTGAGGGAAAGCGCTCAACCTCTTGCCCTTGTTTCTTCCTTTTGACTGCCAAGTTCTACTGGA
TCCTCACAATGATGCAAAGAACTCACAGCCAGGAGTATGCGCATTCCATCCGCCTGGATGGGGACATCAT
TTTGGGGGGTCTTTTTCCTGTTCATGCCAAGGGAGAAAGAGGGGTGCCTTGTGGGGACCTGAAGAAGGAA
AAGGGCATCCACAGACTTGAGGCCATGCTTTATGCAATCGACCAGATTAATAAGGACCCCGATCTCCTCT
CCAATATCACTCTGGGTGTCCGGATCCTTGACACATGTTCCAGGGACACCTATGCTTTGGAGCAGTCACT
AACCTTCGTGCAGGCACTGATAGAGAAAGACGCGTCTGACGTGAAGTGTGCTAATGGAGACCCACCCATA
TTCACCAAGCCCGACAAGATTTCTGGTGTCATAGGTGCTGCAGCAAGCTCCGTGTCCATCATGGTGGCTA
ACATTTTAAGACTTTTTAAGATACCTCAGATTAGCTATGCATCTACAGCCCCAGAGCTAAGTGACAACAC
CAGGTATGATTTCTTTTCTCGGGTGGTCCCGCCTGACTCCTACCAAGCCCAAGCCATGGTGGACATTGTG
ACAGCCCTGGGATGGAATTATGTGTCAACACTGGCTTCCGAGGGGAACTATGGAGAGAGTGGTGTTGAGG
CCTTCACTCAGATCTCAAGGGAGATTGGTGGTGTTTGCATTGCTCAATCACAGAAAATCCCACGTGAACC
AAGACCTGGAGAATTCGAAAAAATTATCAAACGCCTGCTGGAGACACCCAACGCTCGCGCAGTGATTATG
TTTGCCAATGAGGATGACATCAGGAGGATATTGGAAGCAGCAAAAAAATTAAACCAGAGTGGGCATTTTC
TATGGATTGGCTCAGATAGTTGGGGATCCAAAATAGCACCTGTCTATCAGCAGGAGGAGATCGCCGAAGG
AGCTGTGACAATTTTGCCCAAAAGAGCATCAATTGATGGGTTTGACCGATACTTTAGAAGCCGAACTCTT
GCCAATAATCGAAGAAATGTGTGGTTTGCAGAATTTTGGGAGGAGAATTTTGGATGCAAATTAGGATCAC
ATGGGAAGAGGAACAGTCATATAAAGAAATGCACAGGGCTGGAGCGAATTGCACGGGATTCATCTTACGA
ACAAGAAGGAAAGGTTCAATTTGTAATTGATGCAGTGTATTCCATGGCTTATGCACTGCACAACATGCAC
AAAGAACTCTGCCCTGGTTACATAGGCCTTTGCCCAAGGATGGTTACCATCGATGGGAAAGAGCTACTGG
GTTACATCAGGGCCGTGAATTTTAATGGCAGCGCTGGTACACCTGTCACTTTTAATGAGAATGGAGATGC
TCCGGGACGCTACGATATCTTCCAATATCAGATAAACAACAAAAGTACAGAATACAAAATCATCGGCCAC
TGGACCAATCAACTTCACCTAAAAGTGGAAGACATGCAGTGGGCTAATAGAGAGCACACGCACCCAGCAT
CTGTCTGCAGCCTGCCGTGCAAGCCTGGGGAGAGGAAGAAAACCGTGAAAGGGGTCCCTTGCTGCTGGCA
CTGTGAACGCTGCGAGGGTTATAACTACCAGGTGGACGAACTCTCCTGTGAACTCTGCCCTTTGGATCAG
AGACCAAACATCAACCGCACTGGCTGCCAGAGGATTCCCATCATCAAGTTGGAGTGGCATTCACCCTGGG
CCGTGGTACCTGTGTTCATAGCAATATTGGGAATCATTGCCACCACCTTTGTGATTGTGACCTTTGTCCG
CTATAATGACACACCAATCGTGAGAGCTTCTGGGCGGGAACTTAGTTATGTGCTCCTAACGGGGATTTTT
CTCTGTTACTCAATCACTTTTTTGATGATTGCGGCACCTGACACAATCATCTGCTCTTTCCGAAGGATCT
TCCTGGGACTTGGTATGTGTTTCAGCTATGCAGCACTTTTGACCAAAACAAACCGTATCCACCGAATATT
CGAGCAAGGGAAGAAATCTGTCACAGCACCTAAGTTCATCAGCCCAGCATCCCAGCTGGTGATCACCTTC
AGCCTCATCTCCGTACAGCTCCTTGGAGTGTTTGTGTGGTTTGTCGTGGATCCCCCCCACACCATCATTG
ACTATGGAGAACAGCGAACACTGGATCCCGAGAACGCCAGGGGAGTGCTCAAGTGTGACATTTCCGATCT
GTCACTCATTTGTTCACTGGGATACAGTATCCTCCTGATGGTCACTTGTACTGTTTATGCCATTAAAACC
AGAGGGGTTCCAGAAACGTTCAATGAAGCCAAACCTATTGGATTTACCATGTACACCACGTGCATCATTT
GGTTAGCTTTCATTCCCATCTTTTTTGGTACAGCCCAGTCAGCAGAAAAGATGTACATCCAGACAACAAC
ACTTACTGTCTCCATGAGTTTAAGTGCTTCAGTGTCTCTGGGAATGCTCTATATGCCCAAAGTTTATATT
ATAATTTTTCATCCAGAGCAGAACGTTCAAAAACGCAAGAGAAGCTTCAAGGCTGTGGTCACGGCCGCTA
CCATGCAAAGCAAACTGATCCAAAAGGGAAATGACAGACCAAACGGCGAGGTGAAAAGTGAACTCTGTGA
GAGTCTTGAAACCAACACTTCTTCTACCAAGACAACATACATCAGCTACAGTAATCATTCAATCTGA

Translation (908 aa):
MVCEGKRSTSCPCFFLLTAKFYWILTMMQRTHSQEYAHSIRLDGDIILGGLFPVHAKGERGVPCGDLKKE
KGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDASDVKCANGDPPI
FTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIV
TALGWNYVSTLASEGNYGESGVEAFTQISREIGGVCIAQSQKIPREPRPGEFEKIIKRLLETPNARAVIM
FANEDDIRRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQEEIAEGAVTILPKRASIDGFDRYFRSRTL
ANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIARDSSYEQEGKVQFVIDAVYSMAYALHNMH
KELCPGYIGLCPRMVTIDGKELLGYIRAVNFNGSAGTPVTFNENGDAPGRYDIFQYQINNKSTEYKIIGH
WTNQLHLKVEDMQWANREHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQ
RPNINRTGCQRIPIIKLEWHSPWAVVPVFIAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLTGIF
LCYSITFLMIAAPDTIICSFRRIFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITF
SLISVQLLGVFVWFVVDPPHTIIDYGEQRTLDPENARGVLKCDISDLSLICSLGYSILLMVTCTVYAIKT
RGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYI
IIFHPEQNVQKRKRSFKAVVTAATMQSKLIQKGNDRPNGEVKSELCESLETNTSSTKTTYISYSNHSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH