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Report for CCDS80453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80453.1 Public Mus musculus 5 Radil 23 108 98 CCDS HistoryNCBI Gene:231858Re-query CCDS DB by CCDS ID:80453.1Re-query CCDS DB by GeneID:231858See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085758.9 ENSMUSP00000082910.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085758.9Link to Ensembl Protein Viewer:ENSMUSP00000082910.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000085758Re-query CCDS DB by Protein ID:ENSMUSP00000082910
Original member Current member NCBI NM_001310752.1 NP_001297681.1 Accepted alive Link to Nucleotide Sequence:NM_001310752.1Link to Protein Sequence:NP_001297681.1Re-query CCDS DB by Nucleotide ID:NM_001310752Re-query CCDS DB by Protein ID:NP_001297681Link to BLAST:NP_001297681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297681.1 1099 Q69Z89-1 1099 100% 0 0

Chromosomal Locations for CCDS 80453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142485143 142485248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142485413 142485552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142485855 142485991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142486755 142487106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142487447 142487637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142488403 142488553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142494228 142494400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142494736 142494973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142495326 142495438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142497838 142497998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142503913 142503950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142506459 142507088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142508070 142508317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142543405 142544003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142544893 142544915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGGGGAGCAGCATTTTCTTGGGGCTCCAGCCTTCCCCCAGCCACTGGTTGAAATCCTCAGTGGTTATTC
ATGAAGACGCACCCACCATGTTTTATGGGACTCAGTTGATCATGTCTCCTCCCACCAAGAATAAGCTGAA
GCGACAGAGCCAGCTCCTATCCACAATGCTGTCCCGGACACTGAGCTACAAGTATCGTGACCTGGATTCC
ACCTTCTGCAGCCTAGGTGCCAGTGACGACCCCTCAGAGCTCTCCACGCAGCTCTCGGCCCCCGGGGTCC
TCAAGGTGTTTGGGGACAGTGTCTGTACAGGCACCCACTATAAGAGTGTCTTGGCCACTGGCTCCTCCAG
TGCCCAGGAGCTGGTGAAAGAGGCACTGGAGCGCTATGCCCTGGACCCTGAGTGTGCTGGCCAGTACGTG
CTATGTGATGTTGTGGGCCAAGCTGGGGACTCTGGGCAGCGGTGGCAGGCCCAGTGCTTCCGAGTATTTG
GCGACAATGAGAAGCCCCTCTTGATCCAGGAGTTATGGAAACCCCGAGAAGGCTTGTCCCGGAGGTTTGA
GCTAAGGAAGAAGTCAGATGTGGAAGAGCTTGCATCGAGGGATGTGGATACCACCACCGCAGGGATAAAC
GCCCAAGCCCGGAGGCTACAGCGTATCCGTGCCAAGGGAACCCCAGCCCTCACCTCTGAAGCTGCTCAAA
GCTCCCCACCGACCAGGCTGCGCCGTACAGTCAGCGAGACCAGCCTAAGCCCAGCACCATCGCTACCTGA
GGCTGCTCAGAGGCCTGAGGAGCCCGTCCCTGAGGCCATGCGTTACTCGCTGTACCAGTGCCCGCACCTG
CTGCTGTTGCAGGGCTACAGCCAGCAGCACGACAGCCTGGTGTACGTGCTCAGCAAGGAACGGCACACAG
TGGGCCAGCGCACACCGTCTAGCAAACCCAGCATCAGCTTGTCTGCCCCAGACATCCTGCCCCTGCACTG
TACCATTCGCCGCCATCAGTCCCCAGAGGGTGGCCCGGCAGGGACCAGGCTAGTGCTGGAGCCCATCACA
GGGGCTTCGGTGTCAGTCAACTTCTCAGAAGTGGGAAGGAACCCTGTGGTGCTACAACATGGCGACCTGC
TCTCCCTGGGTCTCTATTACCTGCTGCTGTTCAAGGACCCTGGGCAGGCACAGCCACTGCCTGCTTGTGC
CCTCGCCCGTCTTGGGGCGGCACCACAGAGCTGTAGAATGTGTGGTGCGGTGCTCAGAGCCCGTGGGGCC
CCTTCCTTGCCTGCTGCTGTGGTCCGGCGGCGGTCACTGCTCCTGGAGTTTGAGCCCGATGTGGAGGACA
CACTGCTGCAGAGGATCATGACACTGATTGAGCCTGGGGGTGACGACCACAAGCTGACACCTGCCTTCCT
CCTCTGCCTCTGCATCCAGCACTCCGCCATGCACTTCCAGCCGGGTACCTTCAGGCATCTCCTGCTCAAG
ATCTCCAAAAGGGTCCGAGACACTGTCTGGGAGAAGACCAAAGAACTAGCGGAAAAGCAGGCACAACTCC
AGGAGCCCATCTCCTGGGCCAGCTTCCCCATGGCCGACCTGGTTCCCGACCTGCAGCACATCCTGTTTTG
GATGTCAAACTCCATCGAGCTCCTGTACTTCATCCAGCAGAAGTCCCCGCTGTACGTGCAGAGCATGGAG
GAGGAGCTGGACGTCACAGGCTCCAAGGAGTCGCTGTTCTCCTGCACACTGACGGCCAGCGAGGAGGCCA
TGGCTGCCCTGGAGGAGGTGGTGCTCTATGCTTTCCAGCAGTGCGTGTATTACCTCTCCAAGTGCTTGTA
TGTCTGCCTCCCGGCCCTCTTGGAATGCCCCCCATTTCAGACAGAGCGCAGGGAGAGCTGGCGCTCAGGT
CCAGCTCTGCCCGAGGAGCTTCGGCGAGTGGTGTCAGTGTTCCAGGCCACCTTGGACCTCCTGCAGCAGC
TGCAGATGCATCCTGAGGTGGCCTCCCAGATGCTGGCTTATCTCTTCTTCTTCTCTGGCACACTGCTCCT
CAACCAGGTCCTAGACAAGGGGCCCTCTCTGAGTTGCTTCCATTGGCCCAGGGGTGTGCAGGTGTGTGCC
CGCCTGCAGCAGTTCCTGGAGTGGGCCCGGAGTGCTGGCCTTGGAGCACCTGCTGAGCGCTTCTTCCGGA
AGCTTTCCTGCACCCTGCATCTGCTGGCCACTCCCAGGGCTCAGCTCATCCAGATGAGCTGGGCCACCCT
GAGGGTCACATTCCCTGCCCTGAACCCTGCTCAGCTGCACCGGCTTCTGACTCAGTACCAGCTGGCCTCT
GCCATGGGCCCTGTGAGCGCTTGGGAGCCAGGAGCCCCAGACGGCCCGGAGGCCTTCCAGTCAGAGGACA
TCCTGGAGTCCTATGAAAACCCGCCGCCCATTGTTCTGCCGAGCCAGGGCTTCCAGGTAGACCTGGAAGC
CGACTGCGTGGAGGACAGCATCTACCAGCACCTGCTCTACATCCGCCACTTCCTGTGGGGGCTGCGGGGC
CAAGCCAGCCCTGACAGTGGGCCTGCCCAGCCCGAGAGCATCGAGGGCCTGTACCACACAATTCCTGAGG
GCCATCTGGAAGGCCATGGCTGCCCCCTGGCCAATAGGGACCCAGGCAGAGTTGCTGTTGAAACTGCCCC
TCCCCATTCTCTTCCTGTCACGGGAGCTCCCCGGGCTCAGGGTCCCCCTGGAAGACAGCCTACCCGAGGG
GACCGCAGGGGCTCCCAGGCTGGCTCTCTGCACACTGACTCCTCCTGCATGCTCACTCCGCCCAGCACGC
CACTGGGCCTGGAGCCTGCAGGCCCCAGCTGGCCAGAGCCCAGCGGCCTCTGTGGAAGAGCAGTCCTTGA
CGGGCAGAGGAATGGGCCAGGTGGTCTGCCTGGTGCAGTCCTAGAAGGAGATGCGATTCAGGATGCTGAG
CCTCCTGCTGAGGCCTCCAGCCCCAGCTCCAGCGCTGAGGACTTCTGCTACGTGTTCATGGTGGAGCTGG
AGCGAGGCCCCTCGGGGCTGGGAATGGGCCTGATTGATGGGATGCACACACCTCTGGGGGCCCAGGGACT
CTACATACAGACCCTGCTTCCCGGGAGCCCCGCGGCATCTGATGGGCGGCTGTCACTCGGAGACCAAATC
CTGGAGGTGAATGGCAGCAGCCTGAGGGGTGTCAGCTACATGAGGGCAGTGGATTTGATCCGACATGGAG
GCAAGAAGATGCGATTTTTAGTTGCCAAGTCTGACATGGAAACGGCCAAGAAAATCCGCTTCCGCAATCC
CCCTTCCTAA

Translation (1099 aa):
MGSSIFLGLQPSPSHWLKSSVVIHEDAPTMFYGTQLIMSPPTKNKLKRQSQLLSTMLSRTLSYKYRDLDS
TFCSLGASDDPSELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGSSSAQELVKEALERYALDPECAGQYV
LCDVVGQAGDSGQRWQAQCFRVFGDNEKPLLIQELWKPREGLSRRFELRKKSDVEELASRDVDTTTAGIN
AQARRLQRIRAKGTPALTSEAAQSSPPTRLRRTVSETSLSPAPSLPEAAQRPEEPVPEAMRYSLYQCPHL
LLLQGYSQQHDSLVYVLSKERHTVGQRTPSSKPSISLSAPDILPLHCTIRRHQSPEGGPAGTRLVLEPIT
GASVSVNFSEVGRNPVVLQHGDLLSLGLYYLLLFKDPGQAQPLPACALARLGAAPQSCRMCGAVLRARGA
PSLPAAVVRRRSLLLEFEPDVEDTLLQRIMTLIEPGGDDHKLTPAFLLCLCIQHSAMHFQPGTFRHLLLK
ISKRVRDTVWEKTKELAEKQAQLQEPISWASFPMADLVPDLQHILFWMSNSIELLYFIQQKSPLYVQSME
EELDVTGSKESLFSCTLTASEEAMAALEEVVLYAFQQCVYYLSKCLYVCLPALLECPPFQTERRESWRSG
PALPEELRRVVSVFQATLDLLQQLQMHPEVASQMLAYLFFFSGTLLLNQVLDKGPSLSCFHWPRGVQVCA
RLQQFLEWARSAGLGAPAERFFRKLSCTLHLLATPRAQLIQMSWATLRVTFPALNPAQLHRLLTQYQLAS
AMGPVSAWEPGAPDGPEAFQSEDILESYENPPPIVLPSQGFQVDLEADCVEDSIYQHLLYIRHFLWGLRG
QASPDSGPAQPESIEGLYHTIPEGHLEGHGCPLANRDPGRVAVETAPPHSLPVTGAPRAQGPPGRQPTRG
DRRGSQAGSLHTDSSCMLTPPSTPLGLEPAGPSWPEPSGLCGRAVLDGQRNGPGGLPGAVLEGDAIQDAE
PPAEASSPSSSAEDFCYVFMVELERGPSGLGMGLIDGMHTPLGAQGLYIQTLLPGSPAASDGRLSLGDQI
LEVNGSSLRGVSYMRAVDLIRHGGKKMRFLVAKSDMETAKKIRFRNPPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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