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Report for CCDS80434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80434.1 Public Mus musculus 5 Myl10 23 108 98 CCDS HistoryNCBI Gene:59310Re-query CCDS DB by CCDS ID:80434.1Re-query CCDS DB by GeneID:59310See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196436.4 ENSMUSP00000142495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196436.4Link to Ensembl Protein Viewer:ENSMUSP00000142495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196436Re-query CCDS DB by Protein ID:ENSMUSP00000142495
Original member Current member EBI ENSMUST00000197186.1 ENSMUSP00000143165.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197186.1Link to Ensembl Protein Viewer:ENSMUSP00000143165.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197186Re-query CCDS DB by Protein ID:ENSMUSP00000143165
Original member Current member NCBI NM_001085387.2 NP_001078856.1 Accepted alive Link to Nucleotide Sequence:NM_001085387.2Link to Protein Sequence:NP_001078856.1Re-query CCDS DB by Nucleotide ID:NM_001085387Re-query CCDS DB by Protein ID:NP_001078856Link to BLAST:NP_001078856.1
Original member Current member NCBI NM_001303021.1 NP_001289950.1 Accepted alive Link to Nucleotide Sequence:NM_001303021.1Link to Protein Sequence:NP_001289950.1Re-query CCDS DB by Nucleotide ID:NM_001303021Re-query CCDS DB by Protein ID:NP_001289950Link to BLAST:NP_001289950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078856.1 131 Q62082-3 131 100% 0 0
NP_001289950.1 131 Q62082-3 131 100% 0 0

Chromosomal Locations for CCDS 80434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136694247 136694310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136695355 136695459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136697933 136698011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136700702 136700750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136700855 136700953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGACCAGAACCGCGATGGCTTCATTGACAAGGAGGACCTGAGGGACACCTTTGCTGCACTGGGTCGCA
TAAATGTCAAGAACGAGGAATTGGAAGCCATGGTGAAGGAGGCTCCGGGGCCCATCAACTTCACAGTCTT
CCTGACCATGTTTGGGGAGAAACTCAAGGGCACGGACCCAGAAGAGACTATACTGCACGCCTTCAAAGTG
TTTGACACTGAAGGAAAAGGCTTTGTCAAGGCTGACTTCATTAAGGAAAAGCTTATGACGCAGGCTGACC
GGTTCAGTGAGGAGGAGGTCAAGCAGATGTTTGCAGCTTTCCCGCCAGATGTCTGTGGCAACTTAGACTA
CAGGAATCTGTGCTACGTCATCACACACGGCGAGGAGAAGGACTAG

Translation (131 aa):
MDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAPGPINFTVFLTMFGEKLKGTDPEETILHAFKV
FDTEGKGFVKADFIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNLCYVITHGEEKD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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