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Report for CCDS80286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80286.1 Public Mus musculus 5 Pcdh7 23 108 98 CCDS HistoryNCBI Gene:54216Re-query CCDS DB by CCDS ID:80286.1Re-query CCDS DB by GeneID:54216See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094783.6 ENSMUSP00000092376.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094783.6Link to Ensembl Protein Viewer:ENSMUSP00000092376.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094783Re-query CCDS DB by Protein ID:ENSMUSP00000092376
Original member Current member NCBI NM_001310606.1 NP_001297535.1 Accepted alive Link to Nucleotide Sequence:NM_001310606.1Link to Protein Sequence:NP_001297535.1Re-query CCDS DB by Nucleotide ID:NM_001310606Re-query CCDS DB by Protein ID:NP_001297535Link to BLAST:NP_001297535.1

Chromosomal Locations for CCDS 80286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 57719105 57722278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 57913156 57913348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 58128975 58129351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3744 nt):
ATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGGTGCTTGGGCTGTTGTCTCCTTCTGCCGCTCT
GCTTCAGCCTGGCCGCCGCCAAGCAGCTGCTCCGGTACCGGCTGGCCGAGGAGGGCCCCGCCGACGTGCG
GATCGGCAATGTGGCCTCGGACCTGGGCATCGTGACCGGCTCCGGCGAGGTGACTTTCAGCCTTGAGTCT
GGTTCTGAGTATCTGAAGATTGACAACCTCACCGGCGAGCTGAGCACCAGTGAGCGGCGCATCGACCGAG
AAAAGCTGCCCCAATGTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGAT
AGGGCCCTCACAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACG
CCCACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGGCCTGTAGGCACGCTCTACCTGC
TGCCCACGGCCACCGATCGTGACTTTGGTCGCAATGGCATCGAACGCTACGAGCTGCTCCAGGAGCCCGG
GGGTGGCGGCGGCAGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCCTACCCAGGGGGCGGC
GGGAACAGCGCGAGCGGCGGCGGCTCTGGAGGCTCCAAGCGGCGGCTGGACGCGCCTGAGGGTGGCGGCG
GGACGAGTCCTAGTGGCCGAAGCAGTGTGTTTGAGCTTCAGGTGGCAGACACTCCAGACGGCGAGAAACA
ACCGCAGCTGATCGTGAAGGGGGCGCTGGACCGGGAGCAGAGAGATTCCTATGAGCTGACCCTCCGAGTG
CGCGATGGGGGCGACCCACCTCGGTCTTCGCAGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACA
ACAGCCCCCGCTTCGAGAAGAGCGTGTATGAGGCTGACCTGGCTGAGAACAGCGCTCCGGGCACCCCCAT
CCTACAGTTGCGCGCCACCGATTTGGATGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCTGCC
ACCGAGTCGGTAAGACGGCTACTGCGCCTGGATGAAACGTCGGGCTGGCTCAGTGTCTTACACCGGATCG
ACCGCGAGGAAGTGAACCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACTGA
TAAGGCCACCGTAGTCCTCAACATCAAAGACGAGAACGACAACGTTCCCTCCATCGAAATTCGCAAGATA
GGGCGCATCCCACTTAAGGACGGGGTGGCCAACGTAGCCGAAGATGTCCTGGTGGACACCCCCATCGCCC
TGGTTCAGGTGTCCGACCGTGACCAAGGCGAGAACGGGGTAGTCACCTGTACCGTAGTGGGAGACGTTCC
TTTCCAGCTTAAGCCAGCCAGCGACACAGAAGGCGATCAAAACAAGAAAAAGTACTTCCTGCACACATCA
GCCCCACTAGACTATGAGACCACCCGGGAGTTCAACGTGGTCATAGTAGCTGTGGACTCTGGCAGTCCCA
GCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTGGGAGACACTAATGACAACCCTCCTGTCTTTGGCCA
GTCTGTGGTTGAGGTTTACTTTCCAGAGAACAACATTCCCGGGGAGAGGGTAGCCACAGTGCTGGCGACA
GATGCTGACAGCGGGAAGAATGCAGAGATCGCCTATTCACTGGACTCCTCAGTGATGGGGACTTTTGCCA
TCGATCCCGATTCTGGAGACATCCTGGTCAATACAGTACTGGACCGGGAGCAGACTGACAGGTATGAGTT
TAAAGTTAATGCCAAAGACAAAGGCATCCCAGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCT
GATAAAAACGACAACGACCCTAAGTTTATGCAAGATGTCTTTACCTTTTATGTGAAGGAAAACTTACAAC
CCAACAGCCCTGTGGGGATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGAGCCTGTA
CATAGAGGAGAACAGTAACATTTTTTCTATTGAAAATGACACAGGGACCATTTACTCCACAATGTCTTTT
GACAGGGAACATCAGACTACGTACACTTTCAGAGTGAAGGCTGTGGATGGGGGAGATCCTCCCAGGTCGG
CCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAACGCTCCCACAGTTACCCTTCCCAGAAA
CATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAGGACAGTAGTAGCTACAGTGTTAGCGACAGAC
AGTGATGATGGCATCAATGCGGACTTGAACTACAGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGA
TTGATTCCACCAGTGGTGTGGTTTCCTTAGTGGGGAAACTCACCCAGAAGCATTATGGCTTGCACAGGCT
GGTTGTGCAAGTGAATGACAGTGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTATTTGTCAAT
GAAAGTGTTTCCAATGCAACTGTAATTGACTCTCAGATAGTCCGAAGTTTGCATACCCCACTCACCCAGG
ATATAGCTGGTGACCCAAGCTATGAAATTAGCAAACAGAGACTTAGTATTGTCATTGGGGTGGTTGCTGG
CATTATGACAGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAATAAAAAT
GGCTACGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAATCTAAAAAGC
CTAAAAAGGACAAGAAAAACAAAAAATCTAAGCAGCCACTCTACAGCAGTATCGTCACTGTCGAAGCTTC
TAAACCAAATGGACAGAGGTATGATAGTGTCAATGAGAAGCTGTCAGACAGCCCAAGCATGGGCCGATAC
CGATCTGTTAATGGTGGGCCTGGCAGTCCCGACCTGGCAAGGCATTACAAATCCAGTTCCCCATTGCCTA
CTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAAAAAACATCAAGCTGTACAAGATCTACCACCAGC
CAACACATTTGTGGGAGCAGGAGACAACATTTCAATTGGATCAGATCACTGCTCCGAGTACAGCTGTCAA
ACAAGTAACAAGTACAGCAAACAGCCATTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACC
CACATCAGGGGTCACTGCAGAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAG
TTCATCAGGGCCAAGACTGGGTGCCCTTCCACTCCCAGAGGACAACTATGAGAGGACCACGCCGGATGGC
AGTGTTGATTCAAGGCCTCTTCCGGATGTAGCGCTGACCGGCAAGTGCACCCGTGAATGTGATGAATATG
GTCATTCAGACTCCTGCTGGATGCCAGTGCGCACTTCCCCAGAGAGGAAGAAGAGCCAGCCCAAACTCTC
CACTTTCATGCCTGTTGATGAACGAGGAAGCCAGGAAAAGCTGGCCAATGGCGAGGCTGCCATCATGGGT
GACCGCAACAGAAACCTCCTGAACAAAAAATTGACCTCATCCTATGAGACCTTCAGTGCAGCTAGTTTCA
GCAAAAATGAGGAAGCCAACCCTGAGGATATTCCTTTAACAAAAACAGGGGAATATAAGCCATCTCCTGT
CAACACTCTCACTAGAAGAGAAGTTTATCTGTAG

Translation (1247 aa):
MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEVTFSLES
GSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFEGRVIVLDINDNT
PTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGSGEGRRLGPADSAPYPGGG
GNSASGGGSGGSKRRLDAPEGGGGTSPSGRSSVFELQVADTPDGEKQPQLIVKGALDREQRDSYELTLRV
RDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAENSAPGTPILQLRATDLDVGVNGQIEYVFGAA
TESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKI
GRIPLKDGVANVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTS
APLDYETTREFNVVIVAVDSGSPSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLAT
DADSGKNAEIAYSLDSSVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVA
DKNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSF
DREHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLATD
SDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVN
ESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVMMARYCRSKNKN
GYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPNGQRYDSVNEKLSDSPSMGRY
RSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQ
TSNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDG
SVDSRPLPDVALTGKCTRECDEYGHSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMG
DRNRNLLNKKLTSSYETFSAASFSKNEEANPEDIPLTKTGEYKPSPVNTLTRREVYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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