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Report for CCDS80278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80278.1 Public Mus musculus 5 Ldb2 23 108 98 CCDS HistoryNCBI Gene:16826Re-query CCDS DB by CCDS ID:80278.1Re-query CCDS DB by GeneID:16826See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199256.4 ENSMUSP00000143775.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199256.4Link to Ensembl Protein Viewer:ENSMUSP00000143775.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199256Re-query CCDS DB by Protein ID:ENSMUSP00000143775
Original member Current member NCBI NM_001077398.2 NP_001070866.1 Accepted alive Link to Nucleotide Sequence:NM_001077398.2Link to Protein Sequence:NP_001070866.1Re-query CCDS DB by Nucleotide ID:NM_001077398Re-query CCDS DB by Protein ID:NP_001070866Link to BLAST:NP_001070866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070866.1 329 O55203-3 329 100% 0 0

Chromosomal Locations for CCDS 80278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 44476531 44476635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44479099 44479244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44480226 44480349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44532661 44532744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44535038 44535160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44541687 44541859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44669357 44669459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44799362 44799493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGTCCAGCACACCACATGACCCCTTCTATTCTTCTCCTTTCGGCCCATTTTATAGGAGACATACACCAT
ACATGGTACAGCCAGAGTACCGAATCTATGAGATGAACAAGAGACTGCAGTCTCGTACAGAGGACAGTGA
CAACCTCTGGTGGGATGCGTTTGCCACTGAATTTTTTGAAGATGATGCCACATTAACACTTTCATTTTGT
TTGGAAGACGGACCAAAGCGATACACTATCGGCAGGACCCTCATTCCCCGTTATTTTAGCACCGTATTTG
AAGGAGGGGTGACAGACCTGTACTACATCCTTAAACACTCAAAGGAGTCATATCACAACTCATCCATCAC
AGTAGACTGCGACCAGTGTGCCATGGTCACACAGCATGGGAAGCCCATGTTTACCAAGGTATGCACAGAA
GGCAGGCTGATCTTGGAATTCACATTTGATGACCTCATGAGAATAAAAACGTGGCACTTTACCATTAGAC
AGTACAGGGAGCTGGTCCCCAGAAGCATACTAGCCATGCACGCACAAGATCCTCAGGTCCTGGATCAGCT
GTCCAAAAATATCACCAGGATGGGTCTCACAAACTTCACCCTCAACTACCTCAGGTTGTGTGTAATACTG
GAGCCAATGCAGGAACTGATGTCGAGACACAAAACCTACAACCTCAGTCCCCGAGACTGCCTGAAGACCT
GTCTGTTTCAGAAGTGGCAGCGGATGGTGGCCCCGCCAGCAGAACCCACAAGGCAACCGACAACCAAAAG
GAGAAAACGAAAAAACTCCACAAGCAGCACGTCCAATAGCAGTGCCGGGAACACGACCAACAGTGCCGGC
AGCAAGAAGAAGACCCCGGCGGCAAGCCTGAGCCTGGCCACTCAGGGGCTAGGAGCCATCCCGAACTGCA
GCCTCAACCCTGGGAGGGATGGAGACCTGTGTCATTCAACAGCAGTGACCCCTTCTGGCCAATTTAAGGA
GAAGCATTGA

Translation (329 aa):
MSSTPHDPFYSSPFGPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFC
LEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTE
GRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVIL
EPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNTTNSAG
SKKKTPAASLSLATQGLGAIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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