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Report for CCDS79979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79979.1 Public Mus musculus 3 Pi4kb 23 108 98 CCDS HistoryNCBI Gene:107650Re-query CCDS DB by CCDS ID:79979.1Re-query CCDS DB by GeneID:107650See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167008.7 ENSMUSP00000132150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167008.7Link to Ensembl Protein Viewer:ENSMUSP00000132150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167008Re-query CCDS DB by Protein ID:ENSMUSP00000132150
Original member Current member NCBI NM_001293716.1 NP_001280645.1 Accepted alive Link to Nucleotide Sequence:NM_001293716.1Link to Protein Sequence:NP_001280645.1Re-query CCDS DB by Nucleotide ID:NM_001293716Re-query CCDS DB by Protein ID:NP_001280645Link to BLAST:NP_001280645.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001280645.1 484 Q8BKC8-3 484 100% 0 0

Chromosomal Locations for CCDS 79979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94993008 94993193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94994161 94994388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94995835 94995944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94996580 94996684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94996852 94996975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94998848 94999113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95004240 95004372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95004634 95004754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95005759 95005940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCAATCGGCAAACGGCTGGCCACGCTCCCCACTAAAGAGCAAAAAACACAAAGGCTGATCTCAGAGC
TTTCCCTGCTCAACCATAAGCTCCCTGCCCGAGTCTGGCTGCCCACGGCTGGCTTTGACCACCACGTGGT
CCGTGTGCCCCACACACAAGCTGTTGTTCTCAATTCCAAGGATAAGGCTCCCTACCTGATCTACGTGGAA
GTTCTCGAATGTGAAAACTTTGACACAACTAGTGTTCCTGCCCGGATTCCTGAAAACCGAATTCGGAGTA
CACGGTCTGTAGAGAACCTGCCTGAATGTGGTATCACTCATGAGCAGCGAGCTGGCAGCTTCAGCACTGT
GCCCAATTATGACAATGATGATGAAGCCTGGTCAGTGGATGATATAGGCGAGCTGCAAGTGGAGCTCCCT
GAAGTGCACACCAACAGCTGTGACAACATCTCCCAGTTCTCGGTGGACAGCATCACCAGCCAGGAGAGCA
AGGAGCCTGTGTTCATTGCAGCAGGGGACATCCGACGGCGCCTTTCAGAACAGCTGGCTCATACTCCTAC
AGCCTTCAAACGAGACCCTGAAGACCCTTCTGCAGTTGCCCTCAAAGAGCCCTGGCAGGAGAAAGTGCGG
AGGATCAGAGAAGGTTCCCCGTATGGCCATCTTCCCAATTGGCGACTCCTTTCAGTCATTGTCAAGTGTG
GAGATGACCTTCGCCAGGAGCTGCTGGCTTTCCAGGTGTTGAAACAACTGCAGTCCATTTGGGAACAGGA
GCGAGTGCCTCTTTGGATCAAGCCATATAAGATTCTTGTGATTTCAGCTGACAGTGGCATGATTGAACCA
GTAGTCAACGCTGTGTCCATCCACCAGGTGAAGAAACAGTCACAGCTCTCCTTGCTCGATTACTTCCTAC
AGGAACATGGCAGTTATACCACTGAGGCATTCCTCAGTGCCCAGCGCAATTTTGTGCAAAGCTGTGCTGG
CTACTGCTTGGTCTGCTACCTATTGCAAGTCAAGGACAGGCACAACGGGAACATCCTTCTGGACGCAGAA
GGTCACATCATCCACATCGACTTTGGCTTCATCCTTTCCAGCTCACCCCGAAACCTGGGCTTCGAGACAT
CAGCCTTTAAGCTGACCACAGAATTTGTGGATGTAATGGGTGGCCTGAACGGTGATATGTTCAACTACTA
CAAGATGCTCATGCTGCAAGGGCTGATTGCTGCTCGGAAGCACATGGACAAGGTGGTACAGATTGTGGAG
ATCATGCAGCAAGGTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCATTCGCAACCTCAAAGAGAGGT
TCCACATGAGCATGACTGAGGAGCAGCTGCAGCTGCTGGTGGAGCAGATGGTGGACGGCAGCATGAGGTC
CATCACCACCAAACTCTACGATGGCTTCCAGTACCTCACCAATGGCATCATGTGA

Translation (484 aa):
MAIGKRLATLPTKEQKTQRLISELSLLNHKLPARVWLPTAGFDHHVVRVPHTQAVVLNSKDKAPYLIYVE
VLECENFDTTSVPARIPENRIRSTRSVENLPECGITHEQRAGSFSTVPNYDNDDEAWSVDDIGELQVELP
EVHTNSCDNISQFSVDSITSQESKEPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVR
RIREGSPYGHLPNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIEP
VVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQVKDRHNGNILLDAE
GHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGLNGDMFNYYKMLMLQGLIAARKHMDKVVQIVE
IMQQGSQLPCFHGSSTIRNLKERFHMSMTEEQLQLLVEQMVDGSMRSITTKLYDGFQYLTNGIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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