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Report for CCDS79787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79787.1 Public Mus musculus 2 Ggta1 23 108 98 CCDS HistoryNCBI Gene:14594Re-query CCDS DB by CCDS ID:79787.1Re-query CCDS DB by GeneID:14594See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113001.8 ENSMUSP00000108625.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113001.8Link to Ensembl Protein Viewer:ENSMUSP00000108625.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113001Re-query CCDS DB by Protein ID:ENSMUSP00000108625
Original member NCBI NM_001308299.1 NP_001295228.1 Updated not alive Link to Nucleotide Sequence:NM_001308299.1Link to Protein Sequence:NP_001295228.1Re-query CCDS DB by Nucleotide ID:NM_001308299Re-query CCDS DB by Protein ID:NP_001295228
Current member NCBI NM_001308299.2 NP_001295228.1 Accepted alive Link to Nucleotide Sequence:NM_001308299.2Link to Protein Sequence:NP_001295228.1Re-query CCDS DB by Nucleotide ID:NM_001308299Re-query CCDS DB by Protein ID:NP_001295228Link to BLAST:NP_001295228.1

Chromosomal Locations for CCDS 79787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 35402109 35402802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35407945 35408082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35413326 35413427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35416472 35416507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35422180 35422268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35423232 35423327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGATCACTATGCTTCAAGATCTCCATGTCAACAAGATCTCCATGTCAAGATCCAAGTCAGAAACAAGTC
TTCCATCCTCAAGATCTGGATCACAGGAGAAAATAATGAATGTCAAGGGAAAAGTAATCCTGTTGATGCT
GATTGTCTCAACCGTGGTTGTCGTGTTTTGGGAATATGTCAACAGCCCAGAAGGCTCTTTCTTGTGGATA
TATCACACAAAGACCCACAGTTATCAAGAAGACAACGTAGAAGGACGGAGAGAAAAGGGTAGAAATGGAG
ATCGCATTGAAGAGCCTCAGCTATGGGACTGGTTCAATCCAAAGAACCGCCCGGATGTTTTGACAGTGAC
CCCGTGGAAGGCGCCGATTGTGTGGGAAGGCACTTATGACACAGCTCTGCTGGAAAAGTACTACGCCACA
CAGAAACTCACTGTGGGGCTGACAGTGTTTGCTGTGGGAAAGTACATTGAGCATTACTTAGAAGACTTTC
TGGAGTCTGCTGACATGTACTTCATGGTTGGCCATCGGGTCATATTTTACGTCATGATAGACGACACCTC
CCGGATGCCTGTCGTGCACCTGAACCCTCTACATTCCTTACAAGTCTTTGAGATCAGGTCTGAGAAGAGG
TGGCAGGATATCAGCATGATGCGCATGAAGACCATTGGGGAGCACATCCTGGCCCACATCCAGCACGAGG
TCGACTTCCTCTTCTGCATGGACGTGGATCAAGTCTTTCAAGACAACTTCGGGGTGGAAACTCTGGGCCA
GCTGGTAGCACAGCTCCAGGCCTGGTGGTACAAGGCCAGTCCCGAGAAGTTCACCTATGAGAGGCGGGAA
CTGTCGGCCGCGTACATTCCATTCGGAGAGGGGGATTTTTACTACCACGCGGCCATTTTTGGAGGAACGC
CTACTCACATTCTCAACCTCACCAGGGAGTGCTTTAAGGGGATCCTCCAGGACAAGAAACATGACATAGA
AGCCCAGTGGCATGATGAGAGCCACCTCAACAAATACTTCCTTTTCAACAAACCCACTAAAATCCTATCT
CCAGAGTATTGCTGGGACTATCAGATAGGCCTGCCTTCAGATATTAAAAGTGTCAAGGTAGCTTGGCAGA
CAAAAGAGTATAATTTGGTTAGAAATAATGTCTGA

Translation (384 aa):
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEGSFLWI
YHTKTHSYQEDNVEGRREKGRNGDRIEEPQLWDWFNPKNRPDVLTVTPWKAPIVWEGTYDTALLEKYYAT
QKLTVGLTVFAVGKYIEHYLEDFLESADMYFMVGHRVIFYVMIDDTSRMPVVHLNPLHSLQVFEIRSEKR
WQDISMMRMKTIGEHILAHIQHEVDFLFCMDVDQVFQDNFGVETLGQLVAQLQAWWYKASPEKFTYERRE
LSAAYIPFGEGDFYYHAAIFGGTPTHILNLTRECFKGILQDKKHDIEAQWHDESHLNKYFLFNKPTKILS
PEYCWDYQIGLPSDIKSVKVAWQTKEYNLVRNNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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