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Report for CCDS79389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79389.1 Public Mus musculus 15 Fam227a 23 108 98 CCDS HistoryNCBI Gene:75729Re-query CCDS DB by CCDS ID:79389.1Re-query CCDS DB by GeneID:75729See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187519.6 ENSMUSP00000139524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187519.6Link to Ensembl Protein Viewer:ENSMUSP00000139524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187519Re-query CCDS DB by Protein ID:ENSMUSP00000139524
Original member Current member NCBI NM_029407.1 NP_083683.1 Accepted alive Link to Nucleotide Sequence:NM_029407.1Link to Protein Sequence:NP_083683.1Re-query CCDS DB by Nucleotide ID:NM_029407Re-query CCDS DB by Protein ID:NP_083683Link to BLAST:NP_083683.1

Chromosomal Locations for CCDS 79389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79612509 79612581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79615360 79615488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79617696 79617833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79620703 79620855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79623455 79623612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79626237 79626331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79630026 79630119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79634064 79634146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79636679 79636786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79637014 79637137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79640004 79640108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79640644 79640745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79642114 79642260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79643292 79643371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79643948 79644017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79648737 79648831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79649637 79649760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGACATTATCAACGTCAATGCCTTACCAATAATTCCATTGGACGAGCGCCTGGTGGTCTCCGCCAACG
TTCGGACAGTGCTGGAGGATGCCTTGAGAAAGCGGATGCAGGGGAGTCCACCCATCTGTCTCTCAGCATG
CATCATTGGCTCCATGAGCCAGGTGAATCAGAGGATTATGGAAGTAGAACTGGGCTCCAGCCTGATGATC
AGCACCTTGGCAATTGAAGACTATGAGTTGGAGAAGAAGTCTTTAAGAGAGAAAACTCACGGCAGCCCAG
GAGACAAAGTCAAGAAACAGAAGGAAGAGCCACCGATATCTTGCCAAGGCTCAGAGCTCCGGAATGCCAG
AGTGCTTCCCACAAAAAGGAAAACAGCAGATAAGAATCTGCTCGCAGAGCTGCACGAACACCCCCCGTTT
GATGAAATGAAGCCCAATAAACTGCCCAATGGTGTGGACTTCTGTGACATGGTGGGCAATGTGATCCGGT
CTGAGAAAAATCCCCTGAGCGGCAAGTCTTACTGTTCAGACAGGGAACTAGAGAAGTTTCTGTGCTCGCC
TTTTCTCGCCGCCATGTGGCTGGACAGCTTTTGGTGGCTATTTCATGAGAGGTACCAGCCAGACAAGGAG
ATCCAGAAAAAGCTGTTCGACCGAATAGCCCGAAATTACGCCTCCCTGTTGTTCAAAATGTGTCGGTCCC
ATTATGAAGAGGCACTCTTAAAGAGGCTCTCGTCACTTCTGAGCAAAGCCATGTACACCAGCTTCTGCTG
CTGCTTCCCCCAGTCCTGGTTCAACACCCACGAATTCAAGTCAGAGATCTGTAACACCATGAACCTGTGG
GTTTCAGGGATGTATCCTTGCCTACAGAGCTATAACAATTGGGACTACTCAGAACTGGATCCAGAGAGGT
TCCGGCAAGAAGAATTAATGTTACAGAGCAGTCGACTTCTGAAGGCAAGAGAGTTCACCCTCTTCACTTG
TAAGAAATCCTCCATTCAGCAGATAGAACAGAAGCACACGAAGTTCCATAACCTTGTGGGTCTCCTGAAG
GCTTCTCATTCAAAGGTAATGAAGGAAAAAGAACTTTCAAATAAGACTACAGAGGAAAGCTATAGGTGCC
GCGGCATGAAAGATCAAAATATACCTACCCTGCTCTCCAGGAAAGCCACAAAGCAAGTTAAGCAGATATC
ACACGTCAGAGCATGCATGGATACGTTTGTAAAAACGTCCCACCCTGCCTGCAAAAGCCCAGAGCTGACT
TCAAACCAGTTCAACCTTTATGGAAGGAGCCCGCTCATGACGTACTTCTTCCTCAACTACTCCCAGTTGC
AGCTGACTGGTCAGGACCTGCTGGTCAGCAGGAGAGAAAAGACGGAAATCATCCCTGACTCTGCCATGAC
CTACGCTGACATCATCCAGTTGGTCACAAAGAACATGGAGATTCGAAAGAAAAAGCTCCGGCAGCTGGAC
CAGATGCACGAGAACGAGTGGAACTGTTTTAACAATTACCTAACGGAGCTGCAAGAAAACTTTGAGAGGG
AGTTGGAAATCATCAATAAGAAAGAACGAGAGAAGAGAAAGGACAAGAACAGGGTCGTCTCCTCCACGTC
GCTGTTTGAATCGTCTGGCAAGAAATCCAAGGGAAACAAGCAAAGAGAAACTGCCTTTCTTTCAAGGAAG
AAAAAGAAGGAGGTAGAAGAGAGACCAAAAGGTTTCTATTCTCCTTTCTCATTTCAAAACTCTATGGATG
TGGATAACAATTCCCTGGGCCTAAAAAGCCCCTACAGAATCAAGTCTCCTTCCAGTGAGGGCAGCAGCAG
TATCTCCACAATCAAGCAGGACATGCTCTTCCAGCTCTCACCCTCCTCCATGGAATGA

Translation (625 aa):
MDIINVNALPIIPLDERLVVSANVRTVLEDALRKRMQGSPPICLSACIIGSMSQVNQRIMEVELGSSLMI
STLAIEDYELEKKSLREKTHGSPGDKVKKQKEEPPISCQGSELRNARVLPTKRKTADKNLLAELHEHPPF
DEMKPNKLPNGVDFCDMVGNVIRSEKNPLSGKSYCSDRELEKFLCSPFLAAMWLDSFWWLFHERYQPDKE
IQKKLFDRIARNYASLLFKMCRSHYEEALLKRLSSLLSKAMYTSFCCCFPQSWFNTHEFKSEICNTMNLW
VSGMYPCLQSYNNWDYSELDPERFRQEELMLQSSRLLKAREFTLFTCKKSSIQQIEQKHTKFHNLVGLLK
ASHSKVMKEKELSNKTTEESYRCRGMKDQNIPTLLSRKATKQVKQISHVRACMDTFVKTSHPACKSPELT
SNQFNLYGRSPLMTYFFLNYSQLQLTGQDLLVSRREKTEIIPDSAMTYADIIQLVTKNMEIRKKKLRQLD
QMHENEWNCFNNYLTELQENFERELEIINKKEREKRKDKNRVVSSTSLFESSGKKSKGNKQRETAFLSRK
KKKEVEERPKGFYSPFSFQNSMDVDNNSLGLKSPYRIKSPSSEGSSSISTIKQDMLFQLSPSSME


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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