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Report for CCDS78896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78896.1 Public Mus musculus 10 Caps2 23 108 98 CCDS HistoryNCBI Gene:353025Re-query CCDS DB by CCDS ID:78896.1Re-query CCDS DB by GeneID:353025See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092176.7 ENSMUSP00000089815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092176.7Link to Ensembl Protein Viewer:ENSMUSP00000089815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000092176Re-query CCDS DB by Protein ID:ENSMUSP00000089815
Original member Current member NCBI NM_001310675.1 NP_001297604.1 Accepted alive Link to Nucleotide Sequence:NM_001310675.1Link to Protein Sequence:NP_001297604.1Re-query CCDS DB by Nucleotide ID:NM_001310675Re-query CCDS DB by Protein ID:NP_001297604Link to BLAST:NP_001297604.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297604.1 550 Q8BUG5-1 550 100% 0 0

Chromosomal Locations for CCDS 78896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 112175599 112175600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112177744 112177789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112177883 112178008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112179357 112179515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112182406 112182519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112183005 112183072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112190952 112191071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112194928 112195002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112195708 112195803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112195893 112195986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112199642 112199760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112200682 112200761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112203880 112204034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112208278 112208403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112211097 112211193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 112215429 112215604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGTCCCACCACTTGATCTGGGAAGCCTTGTTGACTCTGATGAGGAGGATAATTTTTCACAAACAGCAC
GTGGTACAGTCCATGTTCATCTTAACCCACCGCGGTCAGAGCCTGCTCTGGGCTGGGTTCTGCCATGTCA
AAGACCTAACAGTCAGCATCGACTACAGGAAGTGGAACAGGACGTAATACCTGAGGATTTGCCAGCGCCA
ACAGGCAAATACAGGCTAAAGTACCAGCAGTACGCAAGTGAAATGAAAGACGGCTACAAGCAGTATATTC
AGAGGAGTACAGAGAAGCCAAAGGCAGCCAGCAGGCCAGAGGCAACCGAGAAGGTGGAAGGAGCCAGTCT
GGATGACCTCATGACTTTGGATAGGAAGGCCCTCTTACAGCAAGGTTACGCAGATAGCCCTTACGGTAGA
CAGAGCATCACGAGGAAATCAGATGTGGAGACTGTGGCTATAGAGAAGAAGAAACAGACCGTTGCAGAGC
AGATGATGATGGACCACTTATCCAGGGCTGTCATCAGCGACCCAGAACAAGATTTAAACACCAAGAACCA
AGAGAGTTCTCGTGTCCCTCCAGACTCAGAGAGGGCGCCACTTCGCGTCAGGAGACGAACTCTGCATGAA
ACGAAGATAAGAACCAACTCTGCATTAACAGAGAATGACCTTTCTCAGAAAGTAGAATTTGACGGGAGGG
TCTTATCAAGAAATGGACGCGATGCCTGCCGGGAACTAATTGGGTTTTTCTTTGCCCACGACCAGTCCCT
AACTGTGTATGAATATCGGATGTTCGGGAAAAACAGAACAAGTGTGCTTCCTTTTATTAAAAAAGACATT
TATCATCATCAGTGTGGACGAAGAAAAGGAAAGCAATATGAGCTTGGTGACGTCTATACTGGTGCAACTT
TGACATTTTTGAGCTGTGATCAACCTAGCCTTCCAAAGACCATAAAAGAAAATGCATTGCTTAGACTTCG
AATTACAAATATTGATCAAGTAGCTTTGAATTCTCTGAAAGCTGCCTCTGCGGAACATGGGGAAGAAGAG
GCAGTCAGTCCGGAGGCTCATGATCAGTTGGTGCTACAGGCCATTCAGGATAAATTGAAAGAACAACTGC
ACAAGAAGGGTGCTCGTATTTTGACTGGATTGGGAAGATACTTCCAAGGTTTGGACAAGGAAGGGAATGG
GCTTTTAGAAAAGGCAGATTTTCAGCAAGCTCTGAAAACCTTTCACTTGGAAGTGTCTGAACAGGACTTT
GAGTCTTTCTGGCTAATTCTGCAAGGATATGGCCATAGCAAGAACAAGGTTGACTATGGAGAATTCAAAC
GTGCCATTTTTGGTGAAATGAATGAATATAGGAAGTCATTTGTTCGCAAGGCCTTCATGCAACTGGATTT
TAACAAAACCGGCATTGTGTCTGTAATAGACATAAGAAAGTGTTACTGCGCCAAGAAGCATCCACGTGTG
ATCTCAGGGCATTCAACAGAGGAGGAAATCAAATCATCTTTCCTAGAGACGTTAAAAGGCACCTGCAGCA
AGTGCGATGAAGTTTCATACGGAGAATTCGAAGATTACTATGAAGGCCTAAGTATAGGGGTAGCAGGCGA
TGAAGACTTTGTCAACATCTTACGTATTCCGTGGAGAATTTAG

Translation (550 aa):
MVPPLDLGSLVDSDEEDNFSQTARGTVHVHLNPPRSEPALGWVLPCQRPNSQHRLQEVEQDVIPEDLPAP
TGKYRLKYQQYASEMKDGYKQYIQRSTEKPKAASRPEATEKVEGASLDDLMTLDRKALLQQGYADSPYGR
QSITRKSDVETVAIEKKKQTVAEQMMMDHLSRAVISDPEQDLNTKNQESSRVPPDSERAPLRVRRRTLHE
TKIRTNSALTENDLSQKVEFDGRVLSRNGRDACRELIGFFFAHDQSLTVYEYRMFGKNRTSVLPFIKKDI
YHHQCGRRKGKQYELGDVYTGATLTFLSCDQPSLPKTIKENALLRLRITNIDQVALNSLKAASAEHGEEE
AVSPEAHDQLVLQAIQDKLKEQLHKKGARILTGLGRYFQGLDKEGNGLLEKADFQQALKTFHLEVSEQDF
ESFWLILQGYGHSKNKVDYGEFKRAIFGEMNEYRKSFVRKAFMQLDFNKTGIVSVIDIRKCYCAKKHPRV
ISGHSTEEEIKSSFLETLKGTCSKCDEVSYGEFEDYYEGLSIGVAGDEDFVNILRIPWRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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