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Report for CCDS78731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78731.1 Public Mus musculus 1 Nme7 23 108 98 CCDS HistoryNCBI Gene:171567Re-query CCDS DB by CCDS ID:78731.1Re-query CCDS DB by GeneID:171567See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 78731.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086028.5 ENSMUSP00000083192.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086028.5Link to Ensembl Protein Viewer:ENSMUSP00000083192.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086028Re-query CCDS DB by Protein ID:ENSMUSP00000083192
Original member Current member NCBI NM_178071.6 NP_835172.1 Accepted alive Link to Nucleotide Sequence:NM_178071.6Link to Protein Sequence:NP_835172.1Re-query CCDS DB by Nucleotide ID:NM_178071Re-query CCDS DB by Protein ID:NP_835172Link to BLAST:NP_835172.1

Chromosomal Locations for CCDS 78731.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 164312879 164312938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164328293 164328400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164332612 164332778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164340729 164340839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164343214 164343264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164345219 164345426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164347774 164347879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 164348159 164348181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGAGAGCCTGTCAGCAGGGAAGAAGTTCCAGTTTGGTTTCTCCATATATGGCACCCAAGAATCAGAGCG
AGAGATTCGCTTTCATTGCAGAGTGGTATGATCCAAATGCTTCATTGCTCCGACGCTATGAGCTGCTGTT
TTACCCCACAGACGGATCTGTTGAAATGCATGATGTAAAGAATCGTCGCACCTTCTTAAAGCGGACCAAG
TATGAGGACCTGCGCCTGGAAGATCTATTTATAGGCAACAAAGTCAATGTGTTTTCTCGACAGCTGGTGT
TGATTGACTATGGGGACCAATACACAGCCCGCCAGCTGGGCAGCAGGAAAGAGAAAACTTTAGCCCTGAT
CAAACCAGATGCAGTGTCAAAGGCCGGAGAAATCATTGAGATGATAAACAAAAGTGGATTTACTATAACC
AAACTCCGAATGATGACTCTGACAAGGAAAGAAGCAGCGGACTTTCATGTAGACCATCACTCAAGACCTT
TTTATAACGAACTGATCCAGTTTATCACAAGTGGGCCTGTTATTGCCATGGAGATCTTAAGAGATGACGC
GATCTGTGAGTGGAAAAGGTTGCTTGGACCCGCAAACTCTGGGCTATCACGGACAGATGCCCCCGGAAGC
ATCCGAGCCCTCTTTGGGACAGATGGCGTGAGAAATGCAGCTCACGGCCCTGATACTTTTGCATCTGCTG
CCAGAGAAATGGAATTGTTTTTTCCTTCAAGTGGAGGCTGTGGGCCAGCGAACACTGCTAAATTTACCAA
TTGCACCTGTTGCATCATTAAGCCTCATGCTATCAGTGAAGATTTATTTATTCATTATATGTAA

Translation (277 aa):
MRACQQGRSSSLVSPYMAPKNQSERFAFIAEWYDPNASLLRRYELLFYPTDGSVEMHDVKNRRTFLKRTK
YEDLRLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAVSKAGEIIEMINKSGFTIT
KLRMMTLTRKEAADFHVDHHSRPFYNELIQFITSGPVIAMEILRDDAICEWKRLLGPANSGLSRTDAPGS
IRALFGTDGVRNAAHGPDTFASAAREMELFFPSSGGCGPANTAKFTNCTCCIIKPHAISEDLFIHYM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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