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Report for CCDS78700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78700.1 Public Mus musculus 1 Pla2g4a 23 108 98 CCDS HistoryNCBI Gene:18783Re-query CCDS DB by CCDS ID:78700.1Re-query CCDS DB by GeneID:18783See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111926.8 ENSMUSP00000107557.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111926.8Link to Ensembl Protein Viewer:ENSMUSP00000107557.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111926Re-query CCDS DB by Protein ID:ENSMUSP00000107557
Original member Current member NCBI NM_001305632.1 NP_001292561.1 Accepted alive Link to Nucleotide Sequence:NM_001305632.1Link to Protein Sequence:NP_001292561.1Re-query CCDS DB by Nucleotide ID:NM_001305632Re-query CCDS DB by Protein ID:NP_001292561Link to BLAST:NP_001292561.1

Chromosomal Locations for CCDS 78700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 149830061 149830192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149840618 149840775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149842164 149842359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149851267 149851451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149857445 149857684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149861055 149861126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149864911 149865003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149865116 149865253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149871401 149871515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149872538 149872760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149879990 149880126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149886147 149886288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149887607 149887644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149901100 149901213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149902294 149902442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149922055 149922136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 149922244 149922252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGTTTCTGGTGGAACACCAGTACTCCCATAAGTTTACTGTTGTGGTTCTACGTGCCACCAAAGTAACCA
AGGGGACCTTTGGCGATATGCTGGACACTCCAGATCCTTATGTGGAACTTTTCATCTCTACAACCCCTGA
CAGCAGGAAGCGAACGAGACACTTCAATAATGATATAAACCCCGTGTGGAATGAGACCTTTGAGTTCATT
TTGGATCCTAATCAGGAAAATGTTTTGGAGATCACACTGATGGATGCCAACTACGTCATGGATGAAACCC
TAGGCACAGCTACATTCCCTGTATCTTCAATGAAAGTGGGAGAGAAGAAAGAAGTCCCTTTTATTTTCAA
CCAAGTCACTGAAATGATTCTGGAAATGTCTCTGGAAGTTTGTTCATGCCCAGACCTACGGTTCAGCATG
GCACTGTGTGATCAGGAGAAAACTTTCAGACAGCAGAGGAAAGAGAACATAAAAGAGAACATGAAGAAAC
TTTTGGGTCCAAAAAAGAGTGAGGGGCTTTATTCCACACGTGATGTGCCGGTGGTGGCCATTTTGGGTTC
AGGTGGGGGTTTCCGGGCCATGGTGGGATTCTCTGGTGTGATGAAGGCACTGTATGAGTCGGGGATTTTG
GACTGTGCTACATACATTGCTGGTCTTTCTGGATCCACATGGTACATGTCAACCTTGTACTCTCACCCCG
ATTTTCCAGAGAAAGGTCCCGAGGAGATTAATGAAGAGCTAATGAAAAATGTCAGCCACAACCCTCTCTT
ACTTCTTACACCACAGAAAGTTAAAAGATACGTTGAGTCTTTATGGAAGAAGAAAAGTTCTGGCCAGCCT
GTCACCTTTACTGACATCTTTGGGATGCTAATAGGAGAAACACTAATTCAAAATAGGATGAGCATGACCC
TGAGTAGTTTGAAGGAAAAGGTCAATGCCGCCCGGTGTCCTTTGCCTCTCTTCACGTGTCTCCACGTCAA
ACCTGATGTGTCAGAGCTGATGTTTGCCGATTGGGTGGAATTTAGTCCATATGAGATTGGCATGGCAAAA
TATGGTACCTTTATGGCTCCTGACCTATTTGGAAGCAAGTTTTTTATGGGAACAGTTGTAAAAAAATATG
AAGAAAACCCCTTGCATTTCTTGATGGGTGTCTGGGGCAGTGCCTTTTCTATACTGTTCAACAGAGTTTT
GGGAGTTTCTGGCTCACAGAATAAAGGCTCTACAATGGAAGAGGAATTAGAAAATATTACAGCAAAGCAC
ATCGTGAGTAATGACAGCTCCGACAGTGATGATGAGGCTCAAGGACCCAAAGGCACCGAGAATGAAGAAG
CTGAAAAAGAGTACCAAAGCGACAACCAAGCAAGTTGGGTCCATCGGATGCTAATGGCCTTGGTGAGCGA
CTCGGCTTTATTCAATACCCGAGAAGGACGTGCCGGAAAGGTGCATAACTTCATGCTGGGCTTGAATCTC
AACACATCATATCCACTGTCTCCCCTGAGAGACTTCAGCTCTCAGGATTCCTTCGATGACGAGCTCGACG
CAGCGGTAGCAGATCCAGATGAATTTGAACGAATATATGAACCACTGGATGTCAAAAGTAAGAAGATTCA
TGTGGTAGATAGTGGGCTCACATTTAACCTGCCATATCCCTTGATTCTTCGACCTCAGAGAGGTGTGGAT
CTTATCATCTCCTTTGACTTTTCTGCAAGGCCGAGTGACACCAGTCCCCCTTTCAAGGAACTTCTGCTTG
CAGAGAAGTGGGCGAAAATGAACAAGCTTCCCTTTCCAAAGATCGATCCTTATGTGTTTGATCGGGAAGG
ATTAAAGGAATGCTATGTTTTTAAACCTAAGAATCCTGATGTGGAGAAGGATTGCCCAACCATTATCCAC
TTTGTTCTGGCCAACATCAACTTCAGAAAGTACAAGGCCCCAGGTGTTCTAAGGGAAACCAAAGAAGAGA
AAGAAATTGCTGACTTTGACATTTTTGATGACCCCGAATCGCCATTTTCAACCTTCAACTTTCAGTATCC
CAATCAAGCATTCAAAAGGCTTCACGATTTGATGTACTTCAACACACTGAACAACATTGATGTGATAAAG
GATGCCATTGTTGAGAGCATTGAATACAGAAGACAGAACCCATCTCGTTGCTCTGTTTCCCTCAGTAATG
TTGAAGCAAGAAAATTCTTCAATAAGGAGTTTCTAAGTAAACCCACTGTGTAA

Translation (740 aa):
MFLVEHQYSHKFTVVVLRATKVTKGTFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI
LDPNQENVLEITLMDANYVMDETLGTATFPVSSMKVGEKKEVPFIFNQVTEMILEMSLEVCSCPDLRFSM
ALCDQEKTFRQQRKENIKENMKKLLGPKKSEGLYSTRDVPVVAILGSGGGFRAMVGFSGVMKALYESGIL
DCATYIAGLSGSTWYMSTLYSHPDFPEKGPEEINEELMKNVSHNPLLLLTPQKVKRYVESLWKKKSSGQP
VTFTDIFGMLIGETLIQNRMSMTLSSLKEKVNAARCPLPLFTCLHVKPDVSELMFADWVEFSPYEIGMAK
YGTFMAPDLFGSKFFMGTVVKKYEENPLHFLMGVWGSAFSILFNRVLGVSGSQNKGSTMEEELENITAKH
IVSNDSSDSDDEAQGPKGTENEEAEKEYQSDNQASWVHRMLMALVSDSALFNTREGRAGKVHNFMLGLNL
NTSYPLSPLRDFSSQDSFDDELDAAVADPDEFERIYEPLDVKSKKIHVVDSGLTFNLPYPLILRPQRGVD
LIISFDFSARPSDTSPPFKELLLAEKWAKMNKLPFPKIDPYVFDREGLKECYVFKPKNPDVEKDCPTIIH
FVLANINFRKYKAPGVLRETKEEKEIADFDIFDDPESPFSTFNFQYPNQAFKRLHDLMYFNTLNNIDVIK
DAIVESIEYRRQNPSRCSVSLSNVEARKFFNKEFLSKPTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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