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Report for CCDS78647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78647.1 Public Mus musculus 1 Lrrfip1 23 108 98 CCDS HistoryNCBI Gene:16978Re-query CCDS DB by CCDS ID:78647.1Re-query CCDS DB by GeneID:16978See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189617.2 ENSMUSP00000139811.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189617.2Link to Ensembl Protein Viewer:ENSMUSP00000139811.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189617Re-query CCDS DB by Protein ID:ENSMUSP00000139811
Original member Current member NCBI NM_001310732.1 NP_001297661.1 Accepted alive Link to Nucleotide Sequence:NM_001310732.1Link to Protein Sequence:NP_001297661.1Re-query CCDS DB by Nucleotide ID:NM_001310732Re-query CCDS DB by Protein ID:NP_001297661Link to BLAST:NP_001297661.1

Chromosomal Locations for CCDS 78647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 91053658 91053723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91068563 91068649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91073324 91073341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91076944 91076991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91078391 91078435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91079031 91079081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91082141 91082179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91084946 91085005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91087059 91087124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91088634 91088711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91091602 91091667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91093560 91093637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91100577 91100612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91101185 91101310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91103247 91103318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91105127 91105297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91107298 91107390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91108580 91108672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91110355 91110447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91112156 91112297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91120141 91120190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91122422 91122539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91123078 91123157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91125641 91125745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91128086 91128196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGACCAGCCCAGAGGGCGCGCAAAACAAGGAAATCGACTGTCTGAGTCCAGAGGCGCAAAGACTGGCGG
AGGCCAGGCTCGCAGCGAAGCGTGCAGCCCGAGCCGAGGCTCGAGAGATCCGGATGAAGGAGCTGGAACG
GCAGCAGAAAGAGATCTATCAAGTCCAGAAGAAATATTATGGGCTGGATACAAAATGGGGCGACATCGAG
CAGTGGATGGAAGACAGCGAGCGCTACTCTCGTAGATTCCGGAGAAACACGTCGGCTTCTGACGAAGACG
AGCGCTTGTCCGTGGGTAGTCGCGGCAGCCTAAGGGCACAGCCCGAGCTGGAGTATGGGAGTCCCTACGC
CTGGACTAACGGTTATGACGGAGACTATTGTGGATCCCAGTCCCTAAGTAGAAGATCTGGCAGGAATTCC
AGCTTCAGCGGCGGTGATGGCCGAGTCTCTACTTTGTCATCCTGCAGAGAGGAGAAGTTGGGACTCTCCT
GCTCCAACCTTGGCCTTCCCAGCAGTGGCCTTGCTTCCAAACCCCTGTCTACCCAGAATGGATCCCGGGC
GTCCATGCTGGATGAGAGCAGCCTCTATGGGGCTCGAAGGGGAAGCGCCTGTGGTTCTCGAGCACCCTCA
GAATATGGCAGCCACCTCAACTCCAGCTCCCGGGCCTCTTCTAGGGCCAGCTCTGCAAGGGCCAGTCCTG
TGGTAGAAGAAAGACCAGACAAAGACTTTGCTGAGAAGGGCTCCCGTAACATGCCTAGCCTGTCTGCAGC
CACACTGGCATCTCTGGGTGGGACTTCCTCCCGGAGAGGGAGTGGAGATACCTCCATCTCCATGGACACC
GAAGCATCCATCAGGGAAATCAAGGAACTTAATGAGTTAAAGGACCAGATTCAGGATGTAGAAGGCAAAT
ACATGCAGGGACTGAAAGAGATGAAGGACTCGCTGGCCGAAGTTGAGGAGAAGTACAAGAAAGCTATGGT
CTCCAACGCCCAGCTAGACAATGAGAAGACCAACTTCATGTACCAGGTGGACACACTGAAGGACATGCTG
CTGGAGCTGGAAGAGCAGCTGGCCGAGTCTCAGCGGCAATACGAGGAGAAGAACAAGGAGTTCGAGAGGG
AGAAGCATGCCCACAGCATCCTGCAGTTCCAGTTTGCCGAAGTGAAAGAGGCCCTGCGGCAAAGGGAAGA
GATGCTCGAGGAAATCCGACAGCTGCAGCAGAAACAGGCGGGTTTTATCAGGGAGATTTCTGATCTTCAG
GAAACGATAGAATGGAAAGACAAAAAGATAGGGGCATTAGAAAGACAGAAAGAGTTCTTTGATTCCATAA
GGAGCGAACGAGATGACCTTAGAGAAGAAACAGTCAAGCTGAAGGAGGAGTTGAAGAAACATGGAATAAT
CCTAAATTCAGAAATAGCCACCAACGGAGAGACTTCAGACACAGTAAATGACGTTGGGTATCAAGCCCCT
ACGAAGATAACAAAAGAAGAGCTGAATGCCCTCAAGTCGGCCGGGGAGGGGACCCTAGACGTTAGGTTGA
AAAAGCTCATTGATGAACGGGAATGTCTGTTGGAACAGATTAAGAAGCTCAAAGGGCAGCTGGAGGGAAG
ACAGAAGAACAACAAGCTGGACCTTCTTCGAGCCGAGGACGGTATCTTGGAGAATGGGACAGACGCGCAT
GTCATGGATCTGCAAAGAGATGCCAACAGACAGATCAGCGACCTCAAATTTAAACTTGCAAAATCTGAGC
AAGAGATAACTGCCTTAGAACAAAATGTAATAAGGTTAGAGAGCCAAGTAACGCGCTATCGATCAGCCGC
CGAAAATGCAGAAAAAATAGAAGATGAACTAAAGGCAGAAAAACGGAAGCTCCAGAGAGAGCTTCGCTCT
GCACTGGACAAAACAGAAGAGCTCGAGGTGAGCAACGGCCACCTCGTAAAGCGACTGGAAAAGATGAAAG
CCAACCGCAGCGCTCTCTTGTCCCAGCAATAA

Translation (663 aa):
MTSPEGAQNKEIDCLSPEAQRLAEARLAAKRAARAEAREIRMKELERQQKEIYQVQKKYYGLDTKWGDIE
QWMEDSERYSRRFRRNTSASDEDERLSVGSRGSLRAQPELEYGSPYAWTNGYDGDYCGSQSLSRRSGRNS
SFSGGDGRVSTLSSCREEKLGLSCSNLGLPSSGLASKPLSTQNGSRASMLDESSLYGARRGSACGSRAPS
EYGSHLNSSSRASSRASSARASPVVEERPDKDFAEKGSRNMPSLSAATLASLGGTSSRRGSGDTSISMDT
EASIREIKELNELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDML
LELEEQLAESQRQYEEKNKEFEREKHAHSILQFQFAEVKEALRQREEMLEEIRQLQQKQAGFIREISDLQ
ETIEWKDKKIGALERQKEFFDSIRSERDDLREETVKLKEELKKHGIILNSEIATNGETSDTVNDVGYQAP
TKITKEELNALKSAGEGTLDVRLKKLIDERECLLEQIKKLKGQLEGRQKNNKLDLLRAEDGILENGTDAH
VMDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVTRYRSAAENAEKIEDELKAEKRKLQRELRS
ALDKTEELEVSNGHLVKRLEKMKANRSALLSQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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