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Report for CCDS78561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78561.1 Public Mus musculus 1 Kansl3 23 108 98 CCDS HistoryNCBI Gene:226976Re-query CCDS DB by CCDS ID:78561.1Re-query CCDS DB by GeneID:226976See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186470.1 ENSMUSP00000140597.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186470.1Link to Ensembl Protein Viewer:ENSMUSP00000140597.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186470Re-query CCDS DB by Protein ID:ENSMUSP00000140597
Original member Current member NCBI NM_001310513.1 NP_001297442.1 Accepted alive Link to Nucleotide Sequence:NM_001310513.1Link to Protein Sequence:NP_001297442.1Re-query CCDS DB by Nucleotide ID:NM_001310513Re-query CCDS DB by Protein ID:NP_001297442Link to BLAST:NP_001297442.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297442.1 903 A2RSY1-1 903 100% 0 0

Chromosomal Locations for CCDS 78561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36337631 36337651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36343251 36343384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36343673 36343895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36344070 36344179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36344916 36345046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36345385 36345466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36345838 36346029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36347217 36347294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36348525 36348681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36348818 36349018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36349402 36349465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36351633 36351790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36351926 36352000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36353594 36353665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36353772 36353873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36354098 36354214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36354649 36354780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36358040 36358225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36358370 36358460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36365482 36365652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36367769 36367983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2712 nt):
ATGGCCCACCGGGGTGGGGAGAGGGACTTCCAGACTTCAGCTCGGCGGATGGGTACCTCCCTGCTCTTCC
AGCTTTCAGTGCATGAGCGGGAACTGGACCTCGTTTTCCTGGATCATAGCTATGCAAAACCGTGGAGTGC
CCACCCAGATGCCAGTAGTGCCCGCCCCACCCGCATGCTCTTTGTAACCCCCCGTCGGCAGCAGGAGAAT
ACTATTGAGTCAGACGTTCCAATAGATGTGGAGACGGTCACGGCAACTCCTGTTCCACTTTATGACAATC
AGAAGGCAAGAAGTGTGATGAACGAGTGTGAACGGCACGTGATCTTCGCCAGGACAGATGCAGATGCTCC
TCCTCCGCCAGAAGACTGGGAAGAACATGTCAACAGGACTGGCTGGACAGTGGCTCAGAATAAGCTATTT
AACAAGATCCTCAAAGCCCTGCAGTCTGACCGGCTTGCACGATTGGCCAATGAAGGGGCTTGCAATGAGC
CTGTGCTGCGTCGCGTGGCTGTGGACAAGTGTGCAAGGAGGGTGCGGCAGGCGCTGGCAAGTGTCAGCTG
GGACACCAAGCTGACCCAGTGGCTGCACACCACCCTCGTGGAGACCCTGAGCCTGCCCATGCTGGCTGCT
TACTTGGATGCCCTGCAGACACTGAAAGGGAAGATCCCAACTTTGATAGATCGGATGCTTGTGTCGTCCA
ACACCAAAACTGGGGCTGCAGGAGCGGAGGCCTTGTCCCTTCTCCTCAAGAGGCCCTGGGACCCTGCTGT
TGGTGTGCTTTCACATAACAAACCAAGCAAGCTCCCTGGTTCTCCTTTGATTCTCATCGTCTCCTCTGGT
CCCTCCAGCTCTGTGTTCCCTGCCTCACGCCGCCACCGCTTCTGGCAGTCTCAGCTCTCCTGCTTAGGCA
AGGTCATCCCTGTAGCGACCCATCTACTGAACAATGGCAGTGGGGTAGGAGTTCTGCAGTGCCTCGAACA
CATGATTGGGGCCGTGAGAAGCAAAGTGCTAGAGATTCACAGCCATTTCCCACACAAACCCATCATCCTG
ATTGGATGGAATACGGGAGCTTTGGTGGCCTGTCATGTGTCTGTGATGGAGTACGTCACTGCTGTTGTCT
GCCTTGGGTTTCCTCTGCTTACTGTGGATGGACCCAGGGGGGATGTGGACGATCCCCTCCTGGACATGAA
GACTCCAGTCCTCTTCGTCATTGGTCAGAATTCTCTACAGTGTCACCCTGAAGCCATGGAGGACTTCCGG
GAAAAGATTCGAGCAGAAAATAGCTTGGTGGTGGTTGGGGGAGCTGATGATAATCTCAGAATAAGCAAAG
CAAAGAAGAAATCAGAGGGCCTGACTCAGAGCATGGTGGACAGATGTATTCAGGATGAGATTGTAGACTT
CCTGACTGGAGTGCTCACTCGTGCTGAGGGTCATGTGGGCTCTGAGCCTCGGGATCAGGATGCTGAGAAG
AAGAAGAAACCCCGGGACTTGACCCGAAGAGACCTGGCCTTTGAAATTCCTGAGCGAGGCAGTCGTCCTG
CTTCCCCAGCTGCCAGGCTCCCCACATCCCCCTCAGGCTCAGAGGATCTCTCCAGTGTGTCCAGCAGCCC
CACCTCTAGCCCTAAGACCAAAGTGACCACAGTGACCTCTACCCAGAAATCAAGTCAGATTGGGACCTCC
CAGCTGCTGAAAAGACATGTGCAGAGGACAGAAGCTGTGCTGACCCACAGACAAGCCCAAGCACAGTTTG
CTGCTTTTCTGAAACAAAACATGCTGGTGAGGAAAGCTTTTCCTCCTGGCACCTCCTCCTGTCTCTTTGT
TCCCATTTCATCAGAATCAGTGGAGGACATAGAGAAAGAAGAGCTTCGGGTCCAGCTTAAGAGGCACCAT
TCTTCCAGTCCTCTTCCTGGAGCAAAGCCTTCCAAGCGACCAAAGATCAAAGTGTCCCTGATCTCCCAAG
GGGACACAGTTGGAGGACCTTGCACTCTTTCTCAAGGTGGAACACCTGAAGCTGCCGGAGGGAAGCCCAT
CACCATGACCCTGGGAGCTTCAGCAGGAGCCAAGGAACTCACTGGACTTCTCACTACAGCCAAGTCAAGT
TCTTCTGAAGGTGGAGGTACAGCCAGCACAACCCCATCTGTGGCTTCCAGCAGTGCCACACCTAATGCTA
TCCACACGCTGCAGAGCCGCTTGGTGGCCACTTCTCCAGGCAGCTCCCTTCCAGGGACCGCTTCAGCCAG
CAGCCTCCTCCAGGGCCTCAGCTTCAGCTTACAGGATATTAGCAGCAAGACCTCTGGCCTCCCAGGAAGT
CCCTCCCCAGGGCCAGCCCCACAGGCCACCAGTGTGAAATTGCCAACCCCCATGCAGAGTCTGGGTGCCA
TCACCACAGGCACGAGCACCATTGTCCGTACCATCCCTGTGGCCACCACTCTCTCCTCCTTGGGTGCCAC
TCCTGGTGGGAAGCCCACTGCCATCCACCAGCTGCTGACCAATGGGAGCCTCGCTAAGTTGGCAAGCAGC
CTACCTGGCTTGGCTCAGATTTCCAACCAAGCATCAGGCTTAAAGGTCCCCACCACCATTACTCTGACGC
TGCGTGGCCAGCCAAGCAGAATTACCACGCTAAGCCCTATGGGGTCAGGGGCAACGCCGTCCGAGGAGCC
CAACTCCCAGATGCTACCATCTAGTTCACAGCGCCTGCCTCCAGCACCCTGA

Translation (903 aa):
MAHRGGERDFQTSARRMGTSLLFQLSVHERELDLVFLDHSYAKPWSAHPDASSARPTRMLFVTPRRQQEN
TIESDVPIDVETVTATPVPLYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTVAQNKLF
NKILKALQSDRLARLANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLTQWLHTTLVETLSLPMLAA
YLDALQTLKGKIPTLIDRMLVSSNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIVSSG
PSSSVFPASRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMIGAVRSKVLEIHSHFPHKPIIL
IGWNTGALVACHVSVMEYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQNSLQCHPEAMEDFR
EKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVLTRAEGHVGSEPRDQDAEK
KKKPRDLTRRDLAFEIPERGSRPASPAARLPTSPSGSEDLSSVSSSPTSSPKTKVTTVTSTQKSSQIGTS
QLLKRHVQRTEAVLTHRQAQAQFAAFLKQNMLVRKAFPPGTSSCLFVPISSESVEDIEKEELRVQLKRHH
SSSPLPGAKPSKRPKIKVSLISQGDTVGGPCTLSQGGTPEAAGGKPITMTLGASAGAKELTGLLTTAKSS
SSEGGGTASTTPSVASSSATPNAIHTLQSRLVATSPGSSLPGTASASSLLQGLSFSLQDISSKTSGLPGS
PSPGPAPQATSVKLPTPMQSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAIHQLLTNGSLAKLASS
LPGLAQISNQASGLKVPTTITLTLRGQPSRITTLSPMGSGATPSEEPNSQMLPSSSQRLPPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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