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Report for CCDS78275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78275.1 Public Homo sapiens 7 COPG2 24 110 108 CCDS HistoryNCBI Gene:26958Re-query CCDS DB by CCDS ID:78275.1Re-query CCDS DB by GeneID:26958See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330992.8 ENSP00000331218.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330992.8Link to Ensembl Protein Viewer:ENSP00000331218.8Re-query CCDS DB by Nucleotide ID:ENST00000330992Re-query CCDS DB by Protein ID:ENSP00000331218
Original member Current member NCBI NM_001290033.2 NP_001276962.1 Accepted alive Link to Nucleotide Sequence:NM_001290033.2Link to Protein Sequence:NP_001276962.1Re-query CCDS DB by Nucleotide ID:NM_001290033Re-query CCDS DB by Protein ID:NP_001276962Link to BLAST:NP_001276962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276962.1 726 Q9UBF2-2 726 100% 0 0

Chromosomal Locations for CCDS 78275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130547642 130547845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130548403 130548542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130549314 130549376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130550524 130550649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130551241 130551344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130552355 130552430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130554481 130554724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130555037 130555132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130561033 130561221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130563269 130563336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130564260 130564393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130610953 130611110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130612152 130612238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130613544 130613636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130616990 130617065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130652869 130652948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130662967 130663038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130666849 130666929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130667482 130667534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130668632 130668668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGATTAAAAAATTCGACAAGAAGGACGAGGAGTCTGGTAGTGGCTCCAATCCTTTCCAGCATCTGGAGA
AGAGTGCTGTTTTACAGGAGGCTCGTATATTCAATGAAACTCCAATCAATCCAAGAAGATGTTTGCATAT
TCTTACAAAGATTCTTTACTTACTGAACCAGGGTGAACACTTTGGAACAACGGAAGCTACAGAAGCCTTC
TTTGCAATGACGCGATTGTTTCAATCTAATGATCAAACATTGAGGAGAATGTGCTACCTTACCATCAAAG
AAATGGCTACCATCTCTGAGGATGTGATAATTGTCACAAGCAGTCTGACTAAAGACATGACTGGAAAAGA
AGATGTATACCGAGGCCCGGCCATCAGAGCTCTCTGCAGGATCACCGATGGAACAATGTTGCAAGCCATT
GAAAGATACATGAAGCAGGCCATTGTGGATAAAGTTTCCAGTGTATCCAGTTCAGCACTGGTATCTTCCC
TGCACATGATGAAGATAAGCTATGATGTGGTTAAGCGCTGGATCAATGAAGCCCAAGAAGCTGCATCAAG
TGATAATATTATGGTCCAGTACCATGCATTGGGAGTCCTGTATCACCTTAGAAAGAATGATCGACTTGCT
GTTTCCAAGATGTTGAATAAGTTTACTAAATCTGGTCTCAAGTCACAGTTTGCTTACTGCATGCTGATCC
GAATTGCCAGTCGCTTACTAAAAGAAACTGAGGATGGCCATGAAAGTCCACTGTTTGATTTCATTGAGAG
CTGCTTGCGAAATAAACATGAAATGGTTATTTATGAAGCTGCTTCAGCTATCATCCATCTTCCTAACTGC
ACTGCAAGAGAGTTGGCACCTGCTGTTTCAGTTCTTCAACTTTTCTGTAGTTCTCCTAAGCCAGCCTTGA
GATATGCAGCTGTGAGGACCTTGAACAAGGTGGCAATGAAGCACCCCTCTGCTGTTACTGCCTGCAATCT
GGACTTAGAAAACTTAATCACAGACTCAAACAGAAGCATTGCTACCTTAGCCATTACTACACTCCTCAAA
ACAGGAAGTGAGAGCAGTGTGGACCGGCTCATGAAGCAGATATCTTCTTTTGTGTCTGAAATCTCAGATG
AGTTCAAGGTGGTGGTTGTACAGGCAATTAGTGCTCTCTGTCAGAAATACCCTCGAAAGCACAGTGTCAT
GATGACTTTCCTCTCCAACATGCTCCGAGATGATGGAGGCTTTGAGTACAAGCGGGCCATTGTGGACTGT
ATAATCAGCATTGTGGAAGAGAACCCTGAGAGTAAAGAAGCAGGCCTAGCCCACCTTTGTGAATTCATTG
AGGACTGTGAACACACTGTTCTGGCTACTAAGATTCTACACTTGTTGGGCAAAGAGGGCCCTAGAACGCC
TGTCCCCTCCAAATATATCCGTTTTATTTTTAATAGGGTTGTCCTGGAGAATGAGGCTGTCAGAGCTGCT
GCTGTGAGTGCTTTGGCTAAATTTGGGGCTCAGAATGAGAGTCTTCTCCCAAGCATCCTTGTACTCTTAC
AGAGGTGTATGATGGATACTGATGACGAGGTACGAGACAGAGCTACCTTCTATCTGAATGTGCTGCAGCA
GAGGCAGATGGCACTAAATGCCACATATATCTTTAATGGTTTGACGGTCTCTGTACCAGGGATGGAAAAA
GCCTTACACCAGTACACGTTGGAGCCTTCAGAAAAACCGTTTGACATGAAATCAATTCCTCTTGCTATGG
CTCCTGTCTTTGAACAGAAAGCAGAAATCACACTTGTGGCTACTAAGCCAGAGAAGTTGGCTCCTTCCAG
GCAAGACATTTTCCAAGAACAATTGGCTGCCATTCCTGAGTTTCTGAATATAGGACCCTTGTTCAAGTCT
TCTGAGCCTGTTCAACTTACAGAAGCAGAGACAGAATATTTTGTTCGATGTATCAAGCACATGTTTACCA
ATCACATCGTGTTCCAGTTTGACTGCACCAACACTCTCAATGACCAGCTGCTGGAAAAAGTGACAGTGCA
GATGGAGCCATCAGATTCCTATGAAGTGCTGTCTTGTATCCCAGCCCCCAGCCTTCCTTATAACCAACCA
GGAATATGTTACACTCTTGTTCGTTTGCCTGATGATGACCCTACAGCAGGTACTAACCCTCAGAAGGGAG
GAGATACGTGA

Translation (726 aa):
MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAF
FAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAI
ERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLA
VSKMLNKFTKSGLKSQFAYCMLIRIASRLLKETEDGHESPLFDFIESCLRNKHEMVIYEAASAIIHLPNC
TARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLK
TGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDC
IISIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAA
AVSALAKFGAQNESLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEK
ALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAAIPEFLNIGPLFKS
SEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLSCIPAPSLPYNQP
GICYTLVRLPDDDPTAGTNPQKGGDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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