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Report for CCDS72112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72112.1 Public Mus musculus 8 Rbpms 23 108 98 CCDS HistoryNCBI Gene:19663Re-query CCDS DB by CCDS ID:72112.1Re-query CCDS DB by GeneID:19663See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033994.14 ENSMUSP00000033994.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033994.14Link to Ensembl Protein Viewer:ENSMUSP00000033994.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033994Re-query CCDS DB by Protein ID:ENSMUSP00000033994
Original member Current member NCBI NM_001286168.1 NP_001273097.1 Accepted alive Link to Nucleotide Sequence:NM_001286168.1Link to Protein Sequence:NP_001273097.1Re-query CCDS DB by Nucleotide ID:NM_001286168Re-query CCDS DB by Protein ID:NP_001273097Link to BLAST:NP_001273097.1

Chromosomal Locations for CCDS 72112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33784181 33784186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33789392 33789495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33795082 33795150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33834304 33834454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33862986 33863048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33864333 33864371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33866327 33866404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33929476 33929541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGAACGGCGGCGGCAAAGCCGAGAAGGAGAACACCCCGAGCGAGGCCAACCTTCAGGAGGAGGAGGTCC
GGACCCTATTTGTCAGCGGTCTGCCTCTGGACATCAAGCCCCGAGAGCTGTACCTGCTCTTCAGACCATT
CAAGGGCTATGAAGGTTCTCTCATAAAGCTCACATCTAAACAGCCCGTAGGCTTTGTCAGTTTTGACAGT
CGCTCAGAAGCAGAGGCCGCAAAGAACGCTTTGAACGGCATCCGCTTCGATCCTGAAATCCCGCAAACGC
TACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAG
TACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGGGAGCCATATGCGCTGGATCCCTCCCTCCGA
GGCCACTTCCCAGGGCTGGAAGTCCCGGCAGTTCTGCTGAGGCTGTGTCTCGGGTGTGTGATGGCGGCTG
CAATCTGTCTTGTGGGTATTAATGCGGTCTTCACTGGTGGCGACTGTCATCCAGCTGTTCTGCAAAACTG
GAGCTTGCTGGCTTGA

Translation (191 aa):
MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDS
RSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYALDPSLR
GHFPGLEVPAVLLRLCLGCVMAAAICLVGINAVFTGGDCHPAVLQNWSLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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