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Report for CCDS71961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71961.1 Public Mus musculus 7 Tulp2 23 108 98 CCDS HistoryNCBI Gene:56734Re-query CCDS DB by CCDS ID:71961.1Re-query CCDS DB by GeneID:56734See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71961.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000210813.1 ENSMUSP00000147596.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210813.1Link to Ensembl Protein Viewer:ENSMUSP00000147596.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210813Re-query CCDS DB by Protein ID:ENSMUSP00000147596
Original member Current member NCBI NM_001290996.2 NP_001277925.1 Accepted alive Link to Nucleotide Sequence:NM_001290996.2Link to Protein Sequence:NP_001277925.1Re-query CCDS DB by Nucleotide ID:NM_001290996Re-query CCDS DB by Protein ID:NP_001277925Link to BLAST:NP_001277925.1

Chromosomal Locations for CCDS 71961.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45516316 45516376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45516516 45516686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45517780 45517967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45518586 45518906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45519731 45519843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45520740 45520854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45520943 45521041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45521844 45522015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45522223 45522348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45522440 45522447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGAGCTATGTCGCAGATGGGAGTGGTGAGCGGGCCCCCCTACTGTCACCCCGAGGAGCAGTATACACTC
GGGGCAACGGCCCTGCGGTCCGTCATCATCTTTGCTGGCTTCCAGACAGCTCCGATTCAGACGTGGAGGA
AGTGACCATGGAAGACATCCCCGTCATCTCCCGACCTCCCCAGACGAATCTGGCAAACCTACGCAGGGGC
TGGTTAGCCTCCCCAGGACCCGGGATCAGTCAAGAAGAAAAAGAAGAAGAGGTTGGATCCACGGATGCCA
GAGTTGAAGACAAGACACCCAGCCCAGACCCAGACCCAGACCCTACCGTGAACTCTGACGGAGATCATGG
AGACCTGGCACCCTGCAAGGTGGAAGAAAACACAGCCCAGAAGAATACAGAAACAGCCTCTGGCATCGGG
GATGAAGACCGGGAGAAGGGAGAGGTCACAGAGTCTACAGAGACAAACTATGCCCCAGTGGCATCCAAGG
TTTTGCAAGGCGACGATGGTGACGCCAGCAACCACAATGCCTGGAACATGACCTGCCCCCAGCCTCGCAT
TCCCGGCCCTCGGCTCGGGGAGGACATGGAAGCATACGTGTTGCTCCCTGCACCCCGAGACCACATGGTG
CAGTGCCGCATCGTCCGAAACAAGCACGGCATGGACAAGGGGATGTTCCCTTCCTACTACCTCTACCTGG
AGGCCGAGGATGGTGTAGCAGTACGCTCCAGCCCTTTGGGGCATTTCCTTCTGGCTGGGCGGAAAAGGAA
AAGAAGCAAAACTTCAAATTATCTCATCTCCCTGGACCCCAAAGACATGTCTCGCAATGGGAGCAACTTT
GTAGGCAAAGTTAGATCCAATGTCTTGGGCACGAAATTCACCATCTTCGATAATGGGGTGAACCCTGAGC
GGAGTTACTGGGTTCCAGACAGTGCCCGGATCAGAGAGGAGCTGGGAGTCGTCTGTTATGAGACCAATGT
CTTGGGATTCAGGGGGCCTCGGAAAATGACTGTGATCCTTCCAGGAATGGACAGCCGGAAGCAGAGGATG
AAAGTCCAGCCACAAAATGATCAGGATTCCATATTGAGTCGCGTACAGAAGGGCGCTGGACACGGGCTGC
TTCTACTGCAGAACAAGGCCCCATCGTGGAGCGACGAAAGCGGCGCATACGTACTCAATTTTCACGGTCG
CGTCACGCGGGCTTCAGTCAAGAACTTCCAGATAGTGCACCCGGATGAACCCGACCACCTGGTGCTCCAG
TTTGGCCGTGTGGCCCCAAACATATTCACGATGGATTTCCGATATCCTCTTTGCCCGCTCCAAGCCTTCG
CCATCTGCTTATCCAGTTTCGATGGGAAACTGGCGTTTTTTTGA

Translation (457 aa):
MSYVADGSGERAPLLSPRGAVYTRGNGPAVRHHLCWLPDSSDSDVEEVTMEDIPVISRPPQTNLANLRRG
WLASPGPGISQEEKEEEVGSTDARVEDKTPSPDPDPDPTVNSDGDHGDLAPCKVEENTAQKNTETASGIG
DEDREKGEVTESTETNYAPVASKVLQGDDGDASNHNAWNMTCPQPRIPGPRLGEDMEAYVLLPAPRDHMV
QCRIVRNKHGMDKGMFPSYYLYLEAEDGVAVRSSPLGHFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNF
VGKVRSNVLGTKFTIFDNGVNPERSYWVPDSARIREELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRM
KVQPQNDQDSILSRVQKGAGHGLLLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDHLVLQ
FGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLAFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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