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Report for CCDS7168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7168.1 Public Homo sapiens 10 ZNF438 24 110 108 CCDS HistoryNCBI Gene:220929Re-query CCDS DB by CCDS ID:7168.1Re-query CCDS DB by GeneID:220929See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361310.7 ENSP00000354663.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361310.7Link to Ensembl Protein Viewer:ENSP00000354663.3Re-query CCDS DB by Nucleotide ID:ENST00000361310Re-query CCDS DB by Protein ID:ENSP00000354663
Original member Current member EBI ENST00000413025.5 ENSP00000387546.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413025.5Link to Ensembl Protein Viewer:ENSP00000387546.1Re-query CCDS DB by Nucleotide ID:ENST00000413025Re-query CCDS DB by Protein ID:ENSP00000387546
Original member Current member EBI ENST00000436087.7 ENSP00000406934.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436087.7Link to Ensembl Protein Viewer:ENSP00000406934.2Re-query CCDS DB by Nucleotide ID:ENST00000436087Re-query CCDS DB by Protein ID:ENSP00000406934
Original member Current member EBI ENST00000442986.5 ENSP00000412363.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442986.5Link to Ensembl Protein Viewer:ENSP00000412363.1Re-query CCDS DB by Nucleotide ID:ENST00000442986Re-query CCDS DB by Protein ID:ENSP00000412363
Original member Current member NCBI NM_001143766.2 NP_001137238.1 Accepted alive Link to Nucleotide Sequence:NM_001143766.2Link to Protein Sequence:NP_001137238.1Re-query CCDS DB by Nucleotide ID:NM_001143766Re-query CCDS DB by Protein ID:NP_001137238Link to BLAST:NP_001137238.1
Original member Current member NCBI NM_001143767.2 NP_001137239.1 Accepted alive Link to Nucleotide Sequence:NM_001143767.2Link to Protein Sequence:NP_001137239.1Re-query CCDS DB by Nucleotide ID:NM_001143767Re-query CCDS DB by Protein ID:NP_001137239Link to BLAST:NP_001137239.1
Original member Current member NCBI NM_001143768.2 NP_001137240.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143768.2Link to Protein Sequence:NP_001137240.1Re-query CCDS DB by Nucleotide ID:NM_001143768Re-query CCDS DB by Protein ID:NP_001137240Link to BLAST:NP_001137240.1
Original member Current member NCBI NM_001387405.1 NP_001374334.1 Accepted alive Link to Nucleotide Sequence:NM_001387405.1Link to Protein Sequence:NP_001374334.1Re-query CCDS DB by Nucleotide ID:NM_001387405Re-query CCDS DB by Protein ID:NP_001374334Link to BLAST:NP_001374334.1
Original member Current member NCBI NM_001387411.1 NP_001374340.1 Accepted alive Link to Nucleotide Sequence:NM_001387411.1Link to Protein Sequence:NP_001374340.1Re-query CCDS DB by Nucleotide ID:NM_001387411Re-query CCDS DB by Protein ID:NP_001374340Link to BLAST:NP_001374340.1
Original member Current member NCBI NM_001387412.1 NP_001374341.1 Accepted alive Link to Nucleotide Sequence:NM_001387412.1Link to Protein Sequence:NP_001374341.1Re-query CCDS DB by Nucleotide ID:NM_001387412Re-query CCDS DB by Protein ID:NP_001374341Link to BLAST:NP_001374341.1
Original member Current member NCBI NM_182755.3 NP_877432.1 Accepted alive Link to Nucleotide Sequence:NM_182755.3Link to Protein Sequence:NP_877432.1Re-query CCDS DB by Nucleotide ID:NM_182755Re-query CCDS DB by Protein ID:NP_877432Link to BLAST:NP_877432.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137238.1 828 Q7Z4V0-1 828 100% 0 0
NP_001137239.1 828 Q7Z4V0-1 828 100% 0 0
NP_001137240.1 828 Q7Z4V0-1 828 100% 0 0
NP_001374334.1 828 Q7Z4V0-1 828 100% 0 0
NP_001374340.1 828 Q7Z4V0-1 828 100% 0 0
NP_001374341.1 828 Q7Z4V0-1 828 100% 0 0
NP_877432.1 828 Q7Z4V0-1 828 100% 0 0

Chromosomal Locations for CCDS 7168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 30844961 30845573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30848531 30850367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 30876998 30877034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGCAGAATTCTGTATCAGTACCACCAAAAGATGAAGGTGAATCAAACATCCCTTCTGGAACAATACAGA
GTAGGAAAGGTTTGCAGAATAAGAGTCAGTTTAGGACCATTGCACCAAAAATTGTGCCCAAAGTCCTAAC
GTCCAGAATGCTGCCATGTCATTCACCATCACGCTCTGATCAGGTGAATCTGGGACCCTCCATCAACTCC
AAGCTGCTGGGGATGTCCACCCAGAACTATGCCCTGATGCAGGTTGCTGGCCAGGAGGGGACATTTTCTC
TTGTTGCTCTGCCACATGTTGCCTCAGCTCAGCCAATTCAGAAACCCAGAATGTCCCTACCTGAAAACCT
GAAACTTCCTATTCCTAGATATCAACCCCCTAGAAATAGCAAAGCATCAAGAAAGAAACCCATCCTGATC
TTTCCTAAGAGTGGCTGTAGCAAAGCTCCTGCCCAAACCCAAATGTGTCCTCAGATGTCCCCTTCCCCAC
CTCACCACCCTGAACTCCTGTACAAACCCAGTCCATTTGAGGAAGTACCATCACTAGAGCAAGCCCCAGC
CAGCATTAGCACAGCTGCGCTGACCAATGGAAGTGACCATGGGGACTTGAGACCACCAGTGACCAACACC
CATGGCAGTCTGAACCCTCCTGCTACCCCAGCATCATCCACACCAGAGGAGCCTGCCAAGCAGGACCTCA
CAGCTCTTTCAGGGAAAGCACACTTTGTAAGCAAGATAACATCTAGTAAACCTTCTGCTGTTGCCAGTGA
AAAATTTAAAGAACAAGTTGATCTTGCAAAAACCATGACCAATTTATCACCAACCATTCTTGGCAATGCA
GTTCAGTTGATCTCTTCAGTCCCCAAAGGGAAACTGCCAATCCCACCCTACTCAAGAATGAAGACAATGG
AGGTTTACAAAATCAAATCAGATGCTAACATTGCAGGTTTTTCTTTACCAGGACCTAAGGCCGACTGTGA
TAAGATACCCTCCACCACAGAAGGCTTTAATGCAGCCACCAAGGTGGCAAGCAGGCTACCTGTTCCACAA
GTGTCACAGCAGAGTGCCTGTGAAAGTGCCTTTTGTCCACCCACCAAACTTGATCTTAACCACAAAACAA
AACTGAACAGTGGAGCAGCAAAGAGAAAAGGAAGAAAACGGAAGGTACCAGATGAAATTTTGGCATTTCA
GGGAAAAAGGAGGAAATATATCATTAATAAGTGTAGAGATGGTAAAGAAAGAGTAAAAAATGATCCCCAA
GAATTCAGAGACCAAAAGCTGGGGACCCTGAAAAAATACCGTAGCATTATGCCCAAACCTATCATGGTCA
TACCCACTTTGGCCTCCCTGGCTTCTCCAACTACACTACAGTCCCAGATGCTTGGGGGCCTAGGACAGGA
TGTTTTGTTAAATAATTCACTCACTCCTAAATATCTTGGCTGTAAGCAAGACAACAGCTCTTCCCCTAAG
CCCAGCTCCGTGTTCAGAAATGGATTCTCTGGCATTAAGAAGCCTTGGCACAGATGTCACGTCTGCAACC
ACCACTTCCAGTTCAAACAGCACCTTCGAGACCACATGAATACACACACCAACAGACGCCCTTACAGTTG
TCGGATTTGTCGCAAGTCCTATGTACGTCCTGGCAGCCTGAGCACACACATGAAACTTCATCATGGTGAG
AACCGTCTGAAGAAACTCATGTGTTGTGAGTTTTGTGCAAAAGTGTTTGGCCACATCCGAGTCTATTTTG
GCCATCTGAAAGAAGTGCATAGGGTTGTGATCAGCACTGAGCCTGCGCCCAGTGAACTGCAGCCAGGAGA
CATACCAAAGAACAGAGACATGAGTGTGCGAGGCATGGAGGGATCATTGGAGAGGGAAAACAAGTCCAAC
CTGGAAGAAGACTTCCTTCTAAACCAGGCAGACGAAGTCAAATTACAAATCAAATGTGGTCGTTGTCAGA
TTACTGCTCAGTCTTTTGCGGAAATAAAATTTCATTTACTTGATGTTCATGGAGAGGAAATTGAGGGCAG
GCTACAAGAAGGGACCTTCCCAGGAAGCAAGGGGACTCAGGAAGAGTTGGTGCAGCACGCTAGCCCCGAC
TGGAAAAGGCATCCTGAGAGAGGGAAGCCGGAGAAGGTTCATTCCTCCTCCGAGGAATCACATGCATGTC
CAAGACTGAAAAGGCAGCTCCACCTTCATCAGAATGGCGTGGAAATGCTCATGGAAAATGAAGGACCCCA
GTCAGGAACCAACAAGCCAAGGGAAACCTGCCAGGGCCCTGAGTGTCCTGGCCTCCACACGTTTCTCTTG
TGGTCCCATTCAGGCTTTAACTGCCTGCTTTGTGCAGAGATGCTGGGACGGAAAGAGGACCTCCTCCACC
ACTGGAAGCACCAGCATAACTGTGAGGACCCTTCCAAACTGTGGGCTATTTTAAATACGGTCTCCAACCA
GGGAGTGATCGAACTTTCCAGTGAAGCTGAGAAATGA

Translation (828 aa):
MQNSVSVPPKDEGESNIPSGTIQSRKGLQNKSQFRTIAPKIVPKVLTSRMLPCHSPSRSDQVNLGPSINS
KLLGMSTQNYALMQVAGQEGTFSLVALPHVASAQPIQKPRMSLPENLKLPIPRYQPPRNSKASRKKPILI
FPKSGCSKAPAQTQMCPQMSPSPPHHPELLYKPSPFEEVPSLEQAPASISTAALTNGSDHGDLRPPVTNT
HGSLNPPATPASSTPEEPAKQDLTALSGKAHFVSKITSSKPSAVASEKFKEQVDLAKTMTNLSPTILGNA
VQLISSVPKGKLPIPPYSRMKTMEVYKIKSDANIAGFSLPGPKADCDKIPSTTEGFNAATKVASRLPVPQ
VSQQSACESAFCPPTKLDLNHKTKLNSGAAKRKGRKRKVPDEILAFQGKRRKYIINKCRDGKERVKNDPQ
EFRDQKLGTLKKYRSIMPKPIMVIPTLASLASPTTLQSQMLGGLGQDVLLNNSLTPKYLGCKQDNSSSPK
PSSVFRNGFSGIKKPWHRCHVCNHHFQFKQHLRDHMNTHTNRRPYSCRICRKSYVRPGSLSTHMKLHHGE
NRLKKLMCCEFCAKVFGHIRVYFGHLKEVHRVVISTEPAPSELQPGDIPKNRDMSVRGMEGSLERENKSN
LEEDFLLNQADEVKLQIKCGRCQITAQSFAEIKFHLLDVHGEEIEGRLQEGTFPGSKGTQEELVQHASPD
WKRHPERGKPEKVHSSSEESHACPRLKRQLHLHQNGVEMLMENEGPQSGTNKPRETCQGPECPGLHTFLL
WSHSGFNCLLCAEMLGRKEDLLHHWKHQHNCEDPSKLWAILNTVSNQGVIELSSEAEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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