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Report for CCDS71672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71672.1 Public Mus musculus 5 Stx2 23 108 98 CCDS HistoryNCBI Gene:13852Re-query CCDS DB by CCDS ID:71672.1Re-query CCDS DB by GeneID:13852See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100680.9 ENSMUSP00000098247.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100680.9Link to Ensembl Protein Viewer:ENSMUSP00000098247.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100680Re-query CCDS DB by Protein ID:ENSMUSP00000098247
Original member Current member NCBI NM_001286033.1 NP_001272962.1 Accepted alive Link to Nucleotide Sequence:NM_001286033.1Link to Protein Sequence:NP_001272962.1Re-query CCDS DB by Nucleotide ID:NM_001286033Re-query CCDS DB by Protein ID:NP_001272962Link to BLAST:NP_001272962.1

Chromosomal Locations for CCDS 71672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 128986353 128986430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128988802 128988912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128990964 128991101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128991203 128991276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128992180 128992288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128993495 128993568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128994796 128994870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128996362 128996461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 128999510 128999587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129008394 129008423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGCGGGACCGGCTGCCCGACCTCACGGCGTGTAGGACAAACGACGATGGAGACACTGCTGTCGTCATTG
TGGAGAAGGATCATTTCATGGACGGTTTCTTCCATCAGGTAGAGGAGATTCGAAGCAGCATAGCCAGGAT
TGCTCAGCATGTAGAAGACGTGAAGAAGAACCACAGCATCATCCTGTCTGCTCCAAACCCAGAAGGAAAA
ATAAAAGAAGAGCTGGAGGACCTGAACAAAGAGATCAAGAAAACTGCTAACAGGATCCGGGGCAAGCTGA
AGTCTATTGAGCAGAGCTGTGATCAGGACGAGAATGGGAACCGAACTTCAGTGGATCTGCGGATACGAAG
GACCCAGCACTCGGTGCTGTCACGGAAGTTTGTGGACGTCATGACAGAATACAATGAAGCGCAGATCCTG
TTCCGGGAGCGAAGCAAAGGCCGCATCCAGCGCCAGCTGGAGATCACTGGGAGGACCACCACTGACGACG
AGCTGGAAGAGATGCTGGAGAGCGGGAAGCCGTCCATCTTCATCTCGGATATTATATCAGATTCACAAAT
CACTAGGCAAGCTCTCAATGAGATCGAGTCCCGCCACAAAGACATCATGAAGCTGGAGACCAGCATCCGA
GAGCTGCACGAGATGTTCATGGATATGGCCATGTTTGTCGAGACTCAGGGTGAAATGGTCAACAACATCG
AGAGAAATGTGGTGAACTCTGTAGATTACGTGGAACATGCCAAGGAAGAGACGAAGAAAGCCATCAAATA
CCAGAGCAAGGCCAGGCGGAAGGTGATGTTCGTCCTCATTTGTGTAGTCACTTTGCTTGTGATCCTTGGA
ATTATTCTCGCAACAGCATTGTCATAG

Translation (288 aa):
MRDRLPDLTACRTNDDGDTAVVIVEKDHFMDGFFHQVEEIRSSIARIAQHVEDVKKNHSIILSAPNPEGK
IKEELEDLNKEIKKTANRIRGKLKSIEQSCDQDENGNRTSVDLRIRRTQHSVLSRKFVDVMTEYNEAQIL
FRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFISDIISDSQITRQALNEIESRHKDIMKLETSIR
ELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRKVMFVLICVVTLLVILG
IILATALS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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