NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71488.1 Public Mus musculus 4 Rps6ka1 23 108 98 CCDS HistoryNCBI Gene:20111Re-query CCDS DB by CCDS ID:71488.1Re-query CCDS DB by GeneID:20111See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71488.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003741.15 ENSMUSP00000003741.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003741.15Link to Ensembl Protein Viewer:ENSMUSP00000003741.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000003741Re-query CCDS DB by Protein ID:ENSMUSP00000003741
Original member Current member NCBI NM_001285505.1 NP_001272434.1 Accepted alive Link to Nucleotide Sequence:NM_001285505.1Link to Protein Sequence:NP_001272434.1Re-query CCDS DB by Nucleotide ID:NM_001285505Re-query CCDS DB by Protein ID:NP_001272434Link to BLAST:NP_001272434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272434.1 724 P18653 724 100% 0 0

Chromosomal Locations for CCDS 71488.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133848052 133848174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133848522 133848659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133850701 133850818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133850938 133851014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133851165 133851326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133860053 133860211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133860511 133860600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133860817 133860942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133861416 133861546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133863648 133863750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133864006 133864070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133865025 133865113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133865361 133865398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133865763 133865905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133866362 133866399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133867123 133867229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133869266 133869345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133869499 133869579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133871550 133871631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133871887 133872003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133880917 133880961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133887570 133887632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGCCGCTCGCCCAGCTCAAGGAGCCCTGGCCGCTCATGGAGCTGGTGCCGCTGGACCCGGAGAATGGCC
AGACTTCAGGGGAAGAAGCTGGACTTCAGCCATCCAAGGATGAGGCCATCCTCAAGGAGATCTCCATCAC
ACACCACGTCAAGGCTGGCTCTGAGAAGGCCGATCCATCCCAGTTTGAGCTCCTCAAGGTTCTGGGCCAA
GGATCCTTTGGCAAAGTCTTCCTGGTACGCAAGGTCACCCGGCCTGACAGTGGGCACTTGTATGCCATGA
AAGTATTAAAGAAGGCCACGCTGAAAGTGCGTGACCGTGTTCGGACCAAGATGGAGAGAGACATCCTCGC
TGACGTGAACCACCCGTTCGTGGTGAAGCTACATTATGCCTTCCAGACCGAGGGCAAGCTCTATCTTATT
CTGGACTTCCTGCGTGGTGGAGACCTGTTCACACGGCTCTCAAAGGAGGTCATGTTTACAGAGGAGGATG
TGAAGTTTTACCTGGCTGAGCTGGCACTGGGCCTGGACCACCTGCACAGCTTGGGCATTATTTACAGAGA
CCTCAAGCCTGAGAATATCCTTTTGGATGAGGAGGGCCACATCAAACTCACTGACTTTGGCCTGAGCAAG
GAGGCCATAGACCATGAGAAGAAGGCTTACTCCTTCTGCGGGACAGTGGAGTACATGGCGCCCGAGGTTG
TCAACCGCCAGGGTCACACCCACAGTGCAGACTGGTGGTCCTATGGGGTGCTGATGGGGAAGGACCGGAA
GGAGACCATGACCTTGATTTTGAAGGCGAAGCTAGGCATGCCCCAGTTTCTGAGCACGGAAGCCCAGAGC
CTCCTGCGGGCCCTGTTCAAGAGGAATCCTGCCAATCGGCTTGGCTCGGGCCCTGATGGGGCAGAGGAAA
TTAAGAGACATATCTTCTACTCCACCATTGACTGGAATAAGCTCTACCGGCGTGAGATCAAGCCCCCTTT
CAAGCCGGCTGTGGCCCAGCCCGACGACACCTTCTACTTTGATACCGAGTTCACGTCACGCACACCCAGG
GATTCGCCAGGCATCCCTCCCAGTGCTGGTGCCCATCAGCTGTTCCGTGGCTTCAGCTTCGTGGCCACTG
GTCTGATGGAGGACGACGGCAAGCCTCGGACCACTCAGGCCCCCCTACACTCGGTGGTACAGCAACTCCA
CGGGAAGAACTTGGTTTTCAGTGACGGCTACGTAGTAAAGGAGACGATCGGCGTGGGCTCCTACTCTGTG
TGTAAGCGTTGTGTCCACAAGGCCACCAACATGGAGTATGCTGTCAAGGTCATCGACAAGAGCAAAAGAG
ATCCCTCAGAAGAGATTGAGATTCTTCTGCGGTATGGCCAGCACCCCAACATCATCACCCTGAAAGATGT
GTACGATGATGGTAAGCACGTGTACCTGGTGACAGAGCTGATGAGGGGCGGCGAGCTGCTGGATAAGATC
CTACGGCAGAAATTCTTCTCAGAGCGGGAGGCCAGCTTCGTCCTGCACACGATCAGCAAGACTGTGGAAT
ACTTGCACTCTCAAGGGGTTGTCCACAGAGATCTCAAACCCAGTAACATCCTCTATGTGGATGAGTCTGG
GAACCCCGAGTGCCTGCGCATCTGCGACTTTGGCTTTGCCAAGCAGCTACGGGCCGAGAACGGACTCCTC
ATGACACCTTGCTACACAGCCAACTTTGTGGCACCTGAGGTGCTGAAGCGCCAGGGCTACGATGAAGGCT
GTGACATATGGAGCCTGGGCATTCTGCTGTACACGATGCTGGCAGGATACACTCCATTTGCCAATGGGCC
CAGTGACACCCCAGAGGAGATCCTCACCCGGATCGGCAGCGGGAAGTTCACCCTCAGTGGGGGAAACTGG
AACACGGTTTCAGAGACAGCCAAGGACTTGGTATCTAAGATGCTGCATGTGGACCCCCACCAGCGCCTCA
CAGCCAAGCAGGTCCTGCAGCACCCATGGATCACCCAGAAAGACAAGCTTCCCCAGAGCCAGTTGTCCCA
CCAAGACCTGCAGCTCGTGAAGGGAGCCATGGCGGCTACATACTCTGCTCTCAATAGCTCCAAACCCACC
CCTCAGCTCAAGCCAATTGAGTCGTCTATCCTGGCCCAGCGGCGGGTGAGGAAGCTGCCATCCACCACCC
TGTGA

Translation (724 aa):
MPLAQLKEPWPLMELVPLDPENGQTSGEEAGLQPSKDEAILKEISITHHVKAGSEKADPSQFELLKVLGQ
GSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVVKLHYAFQTEGKLYLI
LDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSK
EAIDHEKKAYSFCGTVEYMAPEVVNRQGHTHSADWWSYGVLMGKDRKETMTLILKAKLGMPQFLSTEAQS
LLRALFKRNPANRLGSGPDGAEEIKRHIFYSTIDWNKLYRREIKPPFKPAVAQPDDTFYFDTEFTSRTPR
DSPGIPPSAGAHQLFRGFSFVATGLMEDDGKPRTTQAPLHSVVQQLHGKNLVFSDGYVVKETIGVGSYSV
CKRCVHKATNMEYAVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKI
LRQKFFSEREASFVLHTISKTVEYLHSQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLL
MTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNW
NTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWITQKDKLPQSQLSHQDLQLVKGAMAATYSALNSSKPT
PQLKPIESSILAQRRVRKLPSTTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH