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Report for CCDS71469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71469.1 Public Mus musculus 4 Zmym6 23 108 98 CCDS HistoryNCBI Gene:100177Re-query CCDS DB by CCDS ID:71469.1Re-query CCDS DB by GeneID:100177See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094713.3 ENSMUSP00000092303.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094713.3Link to Ensembl Protein Viewer:ENSMUSP00000092303.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094713Re-query CCDS DB by Protein ID:ENSMUSP00000092303
Original member Current member NCBI NM_001285887.1 NP_001272816.1 Accepted alive Link to Nucleotide Sequence:NM_001285887.1Link to Protein Sequence:NP_001272816.1Re-query CCDS DB by Nucleotide ID:NM_001285887Re-query CCDS DB by Protein ID:NP_001272816Link to BLAST:NP_001272816.1

Chromosomal Locations for CCDS 71469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127078457 127078546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127086975 127087041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127088329 127088554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127092912 127093083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127100610 127100760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127101849 127101964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127104271 127104421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127105274 127105446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127106576 127106723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127108548 127108715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127109925 127109962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127120428 127120572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127122349 127124177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3474 nt):
ATGAAAGAACCTTTGGATGGTGGATGTGACAAAGCAATGGCACAACAAGGGCTTCTGGACAGAATTAAAG
AAGAACCTGATGATGCTCATGAATATGGACCTCAAGAAAGTGAACTAAAAATCAGTGCCGTGTTTTCAGC
CGGTGACACTTCTCTCGGCTTTCAGGTTGGTCTACCGTCATCCGGCCCGAGTACATCATTTCCTGCAGTT
CCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAAAAACTGCTTCTTAAGGGACAACCTACCTACCGGAAGG
CCGGATTTGCCCAGCTTTACTGCTCCATGGGATGCATCATCAGATTCTCCTCCGCAGTCTGCGTGCCACC
TCTTCCCAAGAGAACCTGTGCACATTGCTCCAAAGACATTTTAAATCCGATGGATGTGATCACAACTCAG
TTTGAAAATTCCTCTCTCTGCAAAGATTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGC
CTGTTGTTACCATATATACCAGTGGCATTTCAGCAAAGTGCAGTATGTGTCAGAAGGGCACTGATAATTT
GGCCCCGAAGCCACTCTATGCCTTGGGGAATTCATCGAGGCTGTCTGCTGAAATGATTGAGACTACAAAT
GACTCAGGAAGAACAGAGCTTTTTTGCTCTATTAACTGCTTATCTGCGTACAGAATTAAGACTGTTATTT
CTTCAGGTATACAGGTTGTGTGTCATAGTTGTAAAACTGCAGCAGTCCCTCAGTATCACCTAGCAATGTC
AAATGGAACTATTTGCAGTTTCTGTAGCTCCAACTGTGTGCTGGCTTTCCAGGGTAGGATGTTTATGTTT
TGCAGCAAGGCTTGCTGTGATGAATACAAAAGGCAGAATAAAGTTAAGGCCTTGTGCGACTACTGTAAGC
TACAGAAGACCATAGAGGACACGGTGCGGTTCTCAGGGATTGACAAGCCGTTCTGTAGTGAAGTTTGCAA
GGTCCTCTCGGCTCGAGACTTTGGGGAAAGATGGGGAAGCTACTGTAAGACGTGCAGTTACTGTTTACAG
ACGTCTGCAAATTTTGTGGAAAACCAACTGGAAGGCAAGCTCCAGGTTTTTTGCTGTGAAGATTGCATGT
CTAAGTTTACAGCTCTGTTGCATCAGACAGCCAGGTGTGATGGTTGTAAACGGCAGGGTAAGCTAAGTGA
GTCCTTGAAATGGAGAGGCAACATCAAATACTTCTGTAACCTGTTCTGTGTCTTGCAGTTTTGCCATCAG
TATAGTGTGAATGACCCAATTCCACAAAGAAAAGTATTTGTGCTCCCAAAGCCAGCACAGGTAATTATTC
CTAAGGCACAAACTGCTGTGACAGCACTCCCTTCTCCAAGGATAGCTACAACACCAGTTATAACCAGTGT
GACATCATTGGCAAAAATACCTGCACTTCAGCCCACCAGGAACACGAACAATGTTTTAACAGGTGCTGGT
CCTACAGAGGTAACAAAGATCATTGGAAATGGAAGTGCACAGGCACCTGCTGAGAGACTTCAGCCTCTGC
AGCCCCCCAAGCTTCTGAAGAACAAAGGCATATTGTGCAAGCCAGTCACCCAGACCAAGGCCACCTCTTG
CAGGCCACATACCCACCATGCTGCATGCCAGACAGATTTACCTCTGCCAGAATGGAAGAGTGAAGAACCT
GAGTCTCCACCGGCAAAAAGAAGAAGAGTAGACTTTTCCCAGACTTACAATGCAGAGTATATCAGATTCG
GTTTCATTATCTGTTCTGGATCAGAGGAAAGTTCACCAAGCCCACAGTGTGTCATTTGTGGAGAGGTCTT
ACCTAGTGAAAGTGTGATGCCAGTAAGTCTTTCTAACCATTTGAAGGCAAAACATTCAGACTTAGAGAAC
AAGCCTGTAGACTTTTTTGAGGAAAAGTCACTTGAAATGGAATGTCAAAATAGTTCTTTAAAAAAGTGTT
TACTAGTTGAAGAGTCACTTGTGAAAGCTTCTTATTTAATCGCTTTCCAAATTGCCGCCAGGAATAAGCC
ATTCTCGATTGCTGAAGAATTAATTAAACCATATTTAGTAGAAATGTGTTCAGAAGTTTTAGGTTCAAGT
GCTGGAGAAAAAATGAAAACCATCCCTCTTTCTAATAGCACAATTGGGTGCAGGATCAAGAAACTGTCTG
ATGACATCGAAGATCAGCTGCTGCAGAAGGTCAGGGAGTCCAGGTGGTTTGCCCTTCAGGTGGACGAGTC
GTCTGAGGCCACAGAGGTGCCGCTTCTCCTCTGCTATGTCCGCTTCATCGACTATGACCGTGGAGATGTG
AAAGAAGAATTACTTTTTTGCACTGAAATGCCTTCTCCGAGCACAGATCTTGAAGTGTTTGAATTAATAA
ATAAATATATTGATAGCAGATCTCTGAATTGGAACCATTGTGTTGGTTTCTGTACTGATGGGGCCGCAAG
CATGACTGACAGGTATTTTCGTTTAAGGTCAAAAATTCAAGAAATTGCCAAGAATACAGTGACATTTACA
CATTGTTTCATTCACCGTGAACACTTAGCAGCCAAAAAGCTATCTCCATGCTTACATGAAATTCTTTTGC
AGTCATCACAAATTTTAAGCTTTGTAAAGAACAGTGCTTCAGATTCACAAATGTTGACAATTTTGTGTGA
AGAGATGGGATCTGAGCATGTGAATTTACCACTTAATGCTGAAGTACGCTGGCTGTCGAGAGGGAGAATT
TTAACAAGATTATTTGAACTGAGACATGAAATTGAAATATTTTTAAATCAAAAGCATTCAGATTTGGCCA
GGTATTTCCATGATGAGGAATGGATTGCAAAGCTAGCCTATCTAGCAGATATATTTTCACTTATAAATAA
ATTAAATTCAAGTCTCCAAGGAACCATGACTACTTTTTTCAATTTGTATAATAAAGTTGACGTATTTCAG
AAAAGGCTAAAAATGTGGTTGAAGCGTGCACAGGAGAATGATTACGGCATGTTCCCTCTGTTTTCTGAGT
TCTTGGACTCATCAGATGTAAGTGTGAAAAACATTGCTAGCATCATTTTTGAGCACCTGGAAGGACTTTC
TCAGATATTCCATGCCTGTTACCCACCAGAAGAGGACTTGCGTTCCGGAAACCTGTGGCTCACAGATCCT
TTTGCCACTTACCACAGTAACAATCTCACTGACTCCGAGGAAGAGAAACTCGCCGTGTTATCTGCCGATA
CGGGATTTCAGTCAGTTCACAAGTCAATGTCTGTCACACAGTTTTGGGTCAATGCAAAGACAAGTTATCC
CAAGCTCCATGAAAAGGCATTGAAGCTGCTGCTGCCCTTCTCAAGCACCTGTCTGTGCGATGCCACCTTT
TCAGCCTTGACTGCATCCAAACAGAGAGACCTTCGGACTTGCGGTCCCACCCTAAGACTGGCAGTCACAT
CATTAGTTCCAAGGATAGAAAAGTTAGCAAAGGAGAAAGAGTAG

Translation (1157 aa):
MKEPLDGGCDKAMAQQGLLDRIKEEPDDAHEYGPQESELKISAVFSAGDTSLGFQVGLPSSGPSTSFPAV
PAAQVFCFGCKKLLLKGQPTYRKAGFAQLYCSMGCIIRFSSAVCVPPLPKRTCAHCSKDILNPMDVITTQ
FENSSLCKDFCSQSCLFSYELKKPVVTIYTSGISAKCSMCQKGTDNLAPKPLYALGNSSRLSAEMIETTN
DSGRTELFCSINCLSAYRIKTVISSGIQVVCHSCKTAAVPQYHLAMSNGTICSFCSSNCVLAFQGRMFMF
CSKACCDEYKRQNKVKALCDYCKLQKTIEDTVRFSGIDKPFCSEVCKVLSARDFGERWGSYCKTCSYCLQ
TSANFVENQLEGKLQVFCCEDCMSKFTALLHQTARCDGCKRQGKLSESLKWRGNIKYFCNLFCVLQFCHQ
YSVNDPIPQRKVFVLPKPAQVIIPKAQTAVTALPSPRIATTPVITSVTSLAKIPALQPTRNTNNVLTGAG
PTEVTKIIGNGSAQAPAERLQPLQPPKLLKNKGILCKPVTQTKATSCRPHTHHAACQTDLPLPEWKSEEP
ESPPAKRRRVDFSQTYNAEYIRFGFIICSGSEESSPSPQCVICGEVLPSESVMPVSLSNHLKAKHSDLEN
KPVDFFEEKSLEMECQNSSLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSS
AGEKMKTIPLSNSTIGCRIKKLSDDIEDQLLQKVRESRWFALQVDESSEATEVPLLLCYVRFIDYDRGDV
KEELLFCTEMPSPSTDLEVFELINKYIDSRSLNWNHCVGFCTDGAASMTDRYFRLRSKIQEIAKNTVTFT
HCFIHREHLAAKKLSPCLHEILLQSSQILSFVKNSASDSQMLTILCEEMGSEHVNLPLNAEVRWLSRGRI
LTRLFELRHEIEIFLNQKHSDLARYFHDEEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQ
KRLKMWLKRAQENDYGMFPLFSEFLDSSDVSVKNIASIIFEHLEGLSQIFHACYPPEEDLRSGNLWLTDP
FATYHSNNLTDSEEEKLAVLSADTGFQSVHKSMSVTQFWVNAKTSYPKLHEKALKLLLPFSSTCLCDATF
SALTASKQRDLRTCGPTLRLAVTSLVPRIEKLAKEKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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