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Report for CCDS71458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71458.1 Public Mus musculus 4 St3gal3 23 108 98 CCDS HistoryNCBI Gene:20441Re-query CCDS DB by CCDS ID:71458.1Re-query CCDS DB by GeneID:20441See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097912.7 ENSMUSP00000095525.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097912.7Link to Ensembl Protein Viewer:ENSMUSP00000095525.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000097912Re-query CCDS DB by Protein ID:ENSMUSP00000095525
Original member NCBI NM_001285521.1 NP_001272450.1 Updated not alive Link to Nucleotide Sequence:NM_001285521.1Link to Protein Sequence:NP_001272450.1Re-query CCDS DB by Nucleotide ID:NM_001285521Re-query CCDS DB by Protein ID:NP_001272450
Current member NCBI NM_001285521.2 NP_001272450.1 Accepted alive Link to Nucleotide Sequence:NM_001285521.2Link to Protein Sequence:NP_001272450.1Re-query CCDS DB by Nucleotide ID:NM_001285521Re-query CCDS DB by Protein ID:NP_001272450Link to BLAST:NP_001272450.1

Chromosomal Locations for CCDS 71458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117933047 117933136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117940010 117940156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117940354 117940500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117958428 117958614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117959075 117959170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117959998 117960061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117964330 117964424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118014705 118014797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118031840 118031882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118107549 118107663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGGACTCTTGGTATTTGTGCGCAATCTGCTGCTAGCCCTCTGCCTCTTCCTGGTCCTGGGATTTTTGT
ATTATTCTGCCTGGAAGCTACACTTACTCCAATGGGAAGACTCCAAGTATGATAGGCTGGGCTTCCTCCT
GAAGCTGGACTCTAAACTGCCTGCCGAGCTAGCCACCAAGTACGCAAACTTTTCCGAGGGAGCTTGCAAA
CCCGGCTACGCTTCAGCCATGATGACTGCCATCTTCCCCAGGTTCTCCAAGCCAGCACCCATGTTCCTGG
ATGACTCCTTTCGCAAGTGGGCTAGGATCCGGGAGTTTGTGCCACCTTTTGGGATCAAAGGTCAAGACAA
TCTGATCAAAGCCATCTTGTCAGTCACCAAAGAATACCGCCTGACCCCTGCCTTGGACAGCCTCCACTGC
CGCCGCTGCATCATTGTAGGCAATGGAGGGGTCCTCGCCAACAAGTCTCTGGGGTCACGGATTGACGACT
ATGACATTGTGATCAGACTGAACTCAGCACCTGTGAAGGGCTTTGAGAGGGACGTGGGCAGCAAGACCAC
CCTACGCATCACCTACCCTGAGGGCGCCATGCAGCGACCTGAGCAATATGAACGAGACTCTCTCTTTGTC
CTCGCTGGCTTCAAGTGGCAGGACTTCAAGTGGCTGAAGTACATCGTCTACAAGGAGAGAGTGAGTGCAT
CTGATGGCTTCTGGAAGTCCGTGGCCACCCGAGTGCCCAAGGAGCCCCCTGAGATCCGCATCCTCAACCC
ATACTTCATCCAGGAGGCTGCCTTCACTCTCATTGGACTGCCCTTCAACAACGGCCTCATGGGCAGAGGG
AACATCCCAACCCTTGGCAGTGTGGCAGTGACCATGGCACTACACGGCTGTGATGAAGTGGCAGTCGCGG
GCTTTGGCTATGACATGAACACACCCAATGCACCCCTGCACTACTATGAAACTGTGCGCATGGCAGCCAT
CAAAGAGTCCTGGACACACAACATCCAGCGAGAGAAAGAGTTTCTGCGGAAGCTAGTGAAGGCACGTGTC
ATCACTGACTTAAGCAGCGGTATCTGA

Translation (358 aa):
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEDSKYDRLGFLLKLDSKLPAELATKYANFSEGACK
PGYASAMMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQDNLIKAILSVTKEYRLTPALDSLHC
RRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPVKGFERDVGSKTTLRITYPEGAMQRPEQYERDSLFV
LAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVPKEPPEIRILNPYFIQEAAFTLIGLPFNNGLMGRG
NIPTLGSVAVTMALHGCDEVAVAGFGYDMNTPNAPLHYYETVRMAAIKESWTHNIQREKEFLRKLVKARV
ITDLSSGI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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